Miyakogusa Predicted Gene

Lj3g3v3084430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3084430.1 Non Characterized Hit- tr|G3VL28|G3VL28_SARHA
Uncharacterized protein (Fragment) OS=Sarcophilus harr,51.85,1e-17,no
description,Anticodon-binding; GLYCYL-TRNA SYNTHETASE,NULL;
GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE,gene.g50285.t1.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g006730.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | H...   135   6e-33
Medtr7g406850.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | H...   134   1e-32
Medtr3g006730.2 | glycyl-tRNA synthetase/glycine-tRNA ligase | H...   134   2e-32
Medtr3g006740.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | H...   126   4e-30

>Medtr3g006730.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | HC |
           chr3:830510-823583 | 20130731
          Length = 856

 Score =  135 bits (341), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 73/87 (83%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           R SK GD+QL VFRFP+LVAPIKCTV PLVQN K EEVAKLIS SLT  GI HKIDIT T
Sbjct: 506 RQSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKFEEVAKLISKSLTAAGISHKIDITGT 565

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FA+TVDS +SVT
Sbjct: 566 SIGKRYARTDELGVPFAVTVDSTTSVT 592


>Medtr7g406850.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | HC |
           chr7:942169-936679 | 20130731
          Length = 686

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 73/87 (83%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           R SK GD+QL VFRFP+LVAPIKCTV PLVQN K E+VAKLIS SLT  GI HKIDIT T
Sbjct: 552 RSSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKYEDVAKLISKSLTAAGISHKIDITGT 611

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FA+TVDS +SVT
Sbjct: 612 SIGKRYARTDELGVPFAVTVDSTTSVT 638


>Medtr3g006730.2 | glycyl-tRNA synthetase/glycine-tRNA ligase | HC |
           chr3:830617-824718 | 20130731
          Length = 640

 Score =  134 bits (338), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 73/87 (83%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           R SK GD+QL VFRFP+LVAPIKCTV PLVQN K EEVAKLIS SLT  GI HKIDIT T
Sbjct: 506 RQSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKFEEVAKLISKSLTAAGISHKIDITGT 565

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FA+TVDS +SVT
Sbjct: 566 SIGKRYARTDELGVPFAVTVDSTTSVT 592


>Medtr3g006740.1 | glycyl-tRNA synthetase/glycine-tRNA ligase | HC |
           chr3:836696-831963 | 20130731
          Length = 704

 Score =  126 bits (317), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 71/87 (81%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           R S+ GD+QL VFRFP+LVAPIKCTV PLV+N + EEVA LIS SLT  GI H IDIT T
Sbjct: 554 RQSEAGDEQLNVFRFPSLVAPIKCTVFPLVKNQEFEEVANLISESLTAAGIWHMIDITGT 613

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FAITVDS +SVT
Sbjct: 614 SIGKRYARTDELGVPFAITVDSTTSVT 640