Miyakogusa Predicted Gene

Lj3g3v3043320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3043320.1 Non Characterized Hit- tr|Q94LR7|Q94LR7_ORYSJ
Putative uncharacterized protein OSJNBb0011A08.17
OS=O,32.71,3e-18,seg,NULL; Shugoshin_C,Shugoshin, C-terminal;
coiled-coil,NULL,CUFF.45185.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g057530.1 | shugoshin protein | HC | chr4:21031670-2102831...   326   2e-89
Medtr1g090657.1 | shugoshin protein | HC | chr1:40597343-4060037...    75   7e-14
Medtr1g090657.2 | shugoshin protein | HC | chr1:40597343-4060037...    70   2e-12

>Medtr4g057530.1 | shugoshin protein | HC | chr4:21031670-21028310 |
           20130731
          Length = 301

 Score =  326 bits (835), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/301 (62%), Positives = 227/301 (75%), Gaps = 25/301 (8%)

Query: 3   MAKRSSIGSLMRKKLSDITNS------DHHHHLPPLDSFPSDQDCTIQQLLKEREALIQL 56
           MAK+S IG+LMRK+LSDITNS      ++H++   L S  +D   +IQQLLKER  LI L
Sbjct: 8   MAKKS-IGNLMRKRLSDITNSSQTIQQENHNNYNTL-SLDND---SIQQLLKERANLINL 62

Query: 57  LAERNKVMETNGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRERIKTLQHELLWR 116
           L++RNK++E +GAE+++LRAD+KKLQ+QNW+LAQSNS MLAELNLGR++IKTLQHELLWR
Sbjct: 63  LSDRNKMIERSGAELQRLRADMKKLQMQNWNLAQSNSLMLAELNLGRDKIKTLQHELLWR 122

Query: 117 AALLKGKTM---EDVQ---EKVEIDAQKSASMSQSQVPKEEDEKVVQPPPKASN-DEQHA 169
           AAL+ G T    E V+   EKVEID +K+AS+SQ Q   EEDEK VQ  P+ SN DE+  
Sbjct: 123 AALINGNTFKMQEKVEIDTEKVEIDTEKNASLSQLQ---EEDEKEVQQSPRISNDDEKQC 179

Query: 170 SMNRRRIRSRCKSIGSSTASXXXXXXXXXX-XXRSLRRHSASFKTREHEPLENLFELEDA 228
            + RRR+RSR  SIGSSTAS             RSLRRHSA+ K   HEPLENLFE+EDA
Sbjct: 180 CLTRRRVRSR--SIGSSTASRKNKSKEKVKDNRRSLRRHSAASKVHVHEPLENLFEIEDA 237

Query: 229 QYIVTQSGPNM-LSSPAVKTETGESSVSRNETTRYSFGRPPRRAAEKVQSYKEVPLNVKM 287
           QY +TQSG N+ LS+P+VKTE GESS  RNE  R+SFGRP RRAAEKV SYKEVPLNVKM
Sbjct: 238 QYAITQSGHNIKLSTPSVKTERGESSSLRNEAPRHSFGRPLRRAAEKVPSYKEVPLNVKM 297

Query: 288 R 288
           R
Sbjct: 298 R 298


>Medtr1g090657.1 | shugoshin protein | HC | chr1:40597343-40600372 |
           20130731
          Length = 397

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 7   SSIGSLMRKKLSDITNSDHHHHLPPLDSFPSDQDCTIQQLLKEREALIQLLAERNKVMET 66
           S +G+  +K L+DITN     H P     P   D +   +L E E + +LL +RN V+E+
Sbjct: 39  SVVGAAQKKILADITNKGQPKHHPAPVLPPPSTDVSFDLILNENEMMRKLLGQRNVVIES 98

Query: 67  NGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRERIKTLQHELLWRAALLKG---K 123
             AE++K +++ +KL+ QN  LA +N+ M  E++  R+ ++ LQ EL  +  +LK     
Sbjct: 99  YKAELQKCQSNFQKLRKQNAELALANTQMTREISASRQMVRELQLELACKNGILKAMKLT 158

Query: 124 TMEDVQEKVEIDAQKSASMSQSQVPKEEDEKVVQPPPKASNDEQHASMNRRRIRSRCKSI 183
           +ME+   + ++     A  S+    K E+E           +EQ+    +R+  S+ +S 
Sbjct: 159 SMENDHNRAKLIHDIVADESKQSDQKFEEEN--------KGEEQNKGEAKRKRMSKSQS- 209

Query: 184 GSSTASXXXXXXXXXXXXRSLRRHSASFKTREHEPLENLFELE-DAQY 230
            S+ A              S RR SA+ K  +    E +FE++ DA +
Sbjct: 210 -SAPAVKQVKSEKVDSQRCSSRRKSAALKAGKSGSTEEVFEIKYDASH 256



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 4/90 (4%)

Query: 203 SLRRHSASFKTREHEPLENLFELEDAQYIVTQSGPNMLSS-PAVKTETGESSVSRNE--- 258
           SLRR SA F+  + EP E+ F+ ED ++ V+    +M  S P   +ET E++    +   
Sbjct: 305 SLRRQSALFRPEKPEPAEDFFDTEDPKFEVSNLCDDMSESLPTASSETSENNACTLDPQV 364

Query: 259 TTRYSFGRPPRRAAEKVQSYKEVPLNVKMR 288
           T R S GRP RR+A KV SY+EVP+N+KMR
Sbjct: 365 TRRSSIGRPSRRSAVKVVSYREVPINLKMR 394


>Medtr1g090657.2 | shugoshin protein | HC | chr1:40597343-40600372 |
           20130731
          Length = 381

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 4/90 (4%)

Query: 203 SLRRHSASFKTREHEPLENLFELEDAQYIVTQSGPNMLSS-PAVKTETGESSVSRNE--- 258
           SLRR SA F+  + EP E+ F+ ED ++ V+    +M  S P   +ET E++    +   
Sbjct: 289 SLRRQSALFRPEKPEPAEDFFDTEDPKFEVSNLCDDMSESLPTASSETSENNACTLDPQV 348

Query: 259 TTRYSFGRPPRRAAEKVQSYKEVPLNVKMR 288
           T R S GRP RR+A KV SY+EVP+N+KMR
Sbjct: 349 TRRSSIGRPSRRSAVKVVSYREVPINLKMR 378



 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 30/228 (13%)

Query: 7   SSIGSLMRKKLSDITNSDHHHHLPPLDSFPSDQDCTIQQLLKEREALIQLLAERNKVMET 66
           S +G+  +K L+DITN     H P                  E E + +LL +RN V+E+
Sbjct: 39  SVVGAAQKKILADITNKGQPKHHP----------------APENEMMRKLLGQRNVVIES 82

Query: 67  NGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRERIKTLQHELLWRAALLKG---K 123
             AE++K +++ +KL+ QN  LA +N+ M  E++  R+ ++ LQ EL  +  +LK     
Sbjct: 83  YKAELQKCQSNFQKLRKQNAELALANTQMTREISASRQMVRELQLELACKNGILKAMKLT 142

Query: 124 TMEDVQEKVEIDAQKSASMSQSQVPKEEDEKVVQPPPKASNDEQHASMNRRRIRSRCKSI 183
           +ME+   + ++     A  S+    K E+E           +EQ+    +R+  S+ +S 
Sbjct: 143 SMENDHNRAKLIHDIVADESKQSDQKFEEEN--------KGEEQNKGEAKRKRMSKSQS- 193

Query: 184 GSSTASXXXXXXXXXXXXRSLRRHSASFKTREHEPLENLFELE-DAQY 230
            S+ A              S RR SA+ K  +    E +FE++ DA +
Sbjct: 194 -SAPAVKQVKSEKVDSQRCSSRRKSAALKAGKSGSTEEVFEIKYDASH 240