Miyakogusa Predicted Gene

Lj3g3v3032110.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3032110.2 tr|H8MPG2|H8MPG2_CORCM 50S ribosomal protein L9
OS=Corallococcus coralloides (strain ATCC 25202 / DS,42.86,6e-19,L9:
ribosomal protein L9,Ribosomal protein L9, bacteria/chloroplast; 50S
RIBOSOMAL PROTEIN L9,NULL; ,CUFF.45166.2
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g057210.1 | 50S ribosomal protein L9 | HC | chr4:20912718-...   226   1e-59

>Medtr4g057210.1 | 50S ribosomal protein L9 | HC |
           chr4:20912718-20916052 | 20130731
          Length = 192

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 142/180 (78%)

Query: 17  HHCFTANPKLLTQFPINGSSLSVFAQXXXXXXXXXXXXEDVVDVGKKGELLDVRAGFYRN 76
            H FT+N    +QF    S   +FAQ            ED+++VGKKGELLDV+AGF+RN
Sbjct: 13  QHSFTSNLNTSSQFSNKTSRFLIFAQKKAKKTRKIILKEDILNVGKKGELLDVKAGFFRN 72

Query: 77  FLLPNGHALLCTPQLLKEMKVEDERIEAEKRRVKEEAQQLALIFETVGAFKVRRKGGKGK 136
           +L P+G A + T  LLKE+K+E+ERIEAEK+RVKEEA QLA I E+VGAFKV+RKGGKGK
Sbjct: 73  YLFPSGKAQIATADLLKELKIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGK 132

Query: 137 QIFGSVTAQDLVDIIKAQLQRDVDKRIVDLPEIRETGEYIAEIKLHPEVTAKVRVTVYGN 196
           QIFGSVTAQDLVDIIKAQLQR+VDKRIV+LPEIRETGEYIAE+KLHPEVTAKV V V  N
Sbjct: 133 QIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTAKVSVNVLAN 192