Miyakogusa Predicted Gene
- Lj3g3v3032100.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3032100.2 Non Characterized Hit- tr|I1J9U5|I1J9U5_SOYBN
Uncharacterized protein OS=Glycine max PE=3
SV=1,88.47,0,tRNA-synt_1,Aminoacyl-tRNA synthetase, class Ia;
Anticodon_1,Valyl/Leucyl/Isoleucyl-tRNA synthetase,,CUFF.45191.2
(1089 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g006450.1 | leucyl-tRNA synthetase | HC | chr7:698037-7039... 1754 0.0
Medtr3g058530.1 | leucyl-tRNA synthetase, putative | HC | chr3:2... 953 0.0
Medtr3g058540.1 | leucyl-tRNA synthetase | HC | chr3:23262925-23... 866 0.0
Medtr6g027620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC ... 56 2e-07
Medtr4g132500.2 | leucyl-tRNA synthetase | HC | chr4:55397369-55... 52 4e-06
Medtr4g132500.1 | leucyl-tRNA synthetase | HC | chr4:55397313-55... 52 4e-06
>Medtr7g006450.1 | leucyl-tRNA synthetase | HC | chr7:698037-703921 |
20130731
Length = 1102
Score = 1754 bits (4544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1103 (76%), Positives = 937/1103 (84%), Gaps = 15/1103 (1%)
Query: 1 MASEGGGGAGKSFARRDRLREIEAKVQKWWEDGQVFKSEPGDAPPKPGEKFFGNFPFPYM 60
MA+ + K F RRDRLREIE+KV+KWWE+ VFKSEPG+ PPKPGEKFFGNFPFPY
Sbjct: 1 MATASSNVSKKCFDRRDRLREIESKVKKWWEEEDVFKSEPGENPPKPGEKFFGNFPFPYT 60
Query: 61 NGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQCFGD-- 118
NGYLHLGHAFSLSKLEFAAAF+RLRGANVLLPFAFHCTGMP+K SADKLAREIQ FG+
Sbjct: 61 NGYLHLGHAFSLSKLEFAAAFYRLRGANVLLPFAFHCTGMPMKTSADKLAREIQQFGNPP 120
Query: 119 XXXXXXXXXXXXXXXXXXDDAN-EXXXXXXXXXXXXXXXXXTGTQVYQWEIMRSVGISDD 177
DD+N + + Q YQWEI+RSVGISD+
Sbjct: 121 VFPGVQEDNAMGAEGASDDDSNAKPSVNNKYKGKKSKAAAKSSGQAYQWEILRSVGISDE 180
Query: 178 EISKFQDPYKWLSYFPPLAVEDLKAFGLGCDWRRSFITTDMNPYFDSFVRWQVRKLKSMG 237
EISKFQDPYKWL+YFPPLAVEDLKAFGLGCDWRRSFITTDMNPYFDSFVRWQ+RKLKS+G
Sbjct: 181 EISKFQDPYKWLTYFPPLAVEDLKAFGLGCDWRRSFITTDMNPYFDSFVRWQMRKLKSLG 240
Query: 238 KIVKDVRYTIFSPLDGQPCADHDRASGEGVQPQEYTVIKMELIAPFPSKFEVLEGKKVFL 297
K+VKDVRYTIFSPLDGQPCADHDRASGEGVQPQEY +IKMEL++PFP KF+ LEGKKVFL
Sbjct: 241 KVVKDVRYTIFSPLDGQPCADHDRASGEGVQPQEYMIIKMELVSPFPDKFKALEGKKVFL 300
Query: 298 AAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVMAHRAALNLAYQNHSRVPEKPTCL 357
AAATLRPETMYGQTNAWVLPDGKYGAFEI ETEVFV+ HRAALNLAYQNHSRVP++PTCL
Sbjct: 301 AAATLRPETMYGQTNAWVLPDGKYGAFEITETEVFVLTHRAALNLAYQNHSRVPQEPTCL 360
Query: 358 LELTGHDLIGLPLRSPLSFNDTIYALPMLSILMDKGTGVVTSVPSDAPDDYMALHDLKSK 417
LELTGHDLIGL LRSPL+ + I+ LPMLSILM+KGTGVVTSVPSDAPDDYMAL LK K
Sbjct: 361 LELTGHDLIGLLLRSPLALTEVIFVLPMLSILMNKGTGVVTSVPSDAPDDYMALKHLKKK 420
Query: 418 PAFRAKFGVKDEWVMPFEIVPIIEVPEFGNKCAETVCLQMKIKSQNEKEKLAEAKKQTYL 477
P FRAK+GVKDEWVMPF+IVPIIEVPEFGNKCAETVCLQMKI+S NE+ KLA+AK TYL
Sbjct: 421 PEFRAKYGVKDEWVMPFDIVPIIEVPEFGNKCAETVCLQMKIESPNERVKLADAKDITYL 480
Query: 478 KGFTEGTMIVGEFAGKKVQEAKPLIRSKLLEIGQAIVYSEPEKRVMSRSGDECVVALTDQ 537
KGF++G +IVGEF G+KVQEAKPLIR KLLE GQAIVYSEPE+ VMSRSGDECVVALTDQ
Sbjct: 481 KGFSQGIIIVGEFKGRKVQEAKPLIRRKLLETGQAIVYSEPERPVMSRSGDECVVALTDQ 540
Query: 538 WYITYGESEWQKLAEERLSSMSLFSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQF 597
WYITYGESEW+KLAE+ LSSM+L+SDET++GF+HTLSWLNQWACSRSFGLGTRIPWDEQF
Sbjct: 541 WYITYGESEWKKLAEDCLSSMNLYSDETQNGFDHTLSWLNQWACSRSFGLGTRIPWDEQF 600
Query: 598 LVESLSDSTIYMAYYTVVHYLQNGDMYGSSQSSIKPQQLTDDVWDYIFCDGPFPKSTDIS 657
LVESLSDSTIYMAYYTV H+LQNGDMYG+++S+IKPQQLTDDVWDYIFC GPFPKSTDIS
Sbjct: 601 LVESLSDSTIYMAYYTVAHHLQNGDMYGTNESAIKPQQLTDDVWDYIFCGGPFPKSTDIS 660
Query: 658 SSLLEKMKKEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSKHHWPRGFRCNGHIMLN 717
S++LE+MK EFEYWYPFDLRVSGKDL+QNHLTFCIYNHTAI SK HWPRGFRCNG ++LN
Sbjct: 661 STVLERMKLEFEYWYPFDLRVSGKDLLQNHLTFCIYNHTAIWSKRHWPRGFRCNGFLLLN 720
Query: 718 NNKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILGLTKEIAW 777
KMSKSTGNFRT+RQAIEEFSADATRF+LADAGDGVDDANFVFE AN AIL LT++IAW
Sbjct: 721 KEKMSKSTGNFRTLRQAIEEFSADATRFALADAGDGVDDANFVFEKANKAILDLTQQIAW 780
Query: 778 YEEILAAESSMRTGPPSTYADRVFANEINIAVKTTEQNYSNYMFREALKTGFYGLQTARD 837
YE+I A+SSMRTG PSTYADRVFANEINIA+KTTEQNY+N+MFREAL +GFYGLQ ARD
Sbjct: 781 YEKIQDAKSSMRTGAPSTYADRVFANEINIAIKTTEQNYTNFMFREALVSGFYGLQAARD 840
Query: 838 EYRFSC------GVGGYNRELVWRFMDGQTRLLAPICPHYAEFIWRELLKKDGFVVKAGW 891
EYR + V YN+ELVW FMD QTRLLAPICPHYAEFIWRE+LKK+GFVVKAGW
Sbjct: 841 EYRLTYKENNQDNVKDYNQELVWHFMDVQTRLLAPICPHYAEFIWREILKKEGFVVKAGW 900
Query: 892 PTADAPDLTLKRANEYLQESIGMMRXXXXXXXXXXXXXXXXXXPVASVAENKVTGLVYVN 951
PTADAPDLTLK AN+YLQ+SI +R ++ ENK+T L++VN
Sbjct: 901 PTADAPDLTLKSANKYLQDSIDSIRKLLEKKIPGSKKANKQGALATALKENKITCLIFVN 960
Query: 952 EQFDGWKAECLNILQNKFNKDTRTFAPDSEILEALQHSSVGQSSNFKQTQKQCMPFLRFQ 1011
EQFDGWKA CL+ILQNKFN+DTRTFAP SEILEA++ SSVGQS +FKQ QK C PFL+F+
Sbjct: 961 EQFDGWKAVCLSILQNKFNRDTRTFAPHSEILEAIRQSSVGQSFDFKQIQKICNPFLKFK 1020
Query: 1012 KEQAIKLGAQALDLRLPFGEIEVLQENLDLIKRQIN-----LEHVEIXXXXXXXXXXKAG 1066
K++AI LG QALDLRLPFGEIEVL+EN D IKRQI+ ++ VEI KAG
Sbjct: 1021 KDEAIALGEQALDLRLPFGEIEVLRENKDFIKRQISSKELVVQDVEILSAADADSVAKAG 1080
Query: 1067 PLASLLNQNPPSPGKPTAIFLTQ 1089
+S LNQNPPSPG PT IFLTQ
Sbjct: 1081 S-SSSLNQNPPSPGVPTVIFLTQ 1102
>Medtr3g058530.1 | leucyl-tRNA synthetase, putative | HC |
chr3:23258699-23255843 | 20130731
Length = 570
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/568 (80%), Positives = 489/568 (86%), Gaps = 3/568 (0%)
Query: 523 MSRSGDECVVALTDQWYITYGESEWQKLAEERLSSMSLFSDETRHGFEHTLSWLNQWACS 582
MSRSGDECVVALTDQWYITYGESEW++L +E LS+MSL+ DETRHGFEHTL WLNQWACS
Sbjct: 1 MSRSGDECVVALTDQWYITYGESEWKQLTDECLSNMSLYHDETRHGFEHTLGWLNQWACS 60
Query: 583 RSFGLGTRIPWDEQFLVESLSDSTIYMAYYTVVHYLQNGDMYGSSQSSIKPQQLTDDVWD 642
RSFGLGTRIPWDEQFLVESLSDSTIYMAYYT+ HYLQN DMYG+S+SSIKPQQLTDDVWD
Sbjct: 61 RSFGLGTRIPWDEQFLVESLSDSTIYMAYYTIAHYLQNNDMYGTSESSIKPQQLTDDVWD 120
Query: 643 YIFCDGPFPKSTDISSSLLEKMKKEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSKH 702
YIFC GPFPKSTDISSS+LEKMK EFEYWYPFDLRVSGKDLIQNHLTFC+YNHTAI K
Sbjct: 121 YIFCGGPFPKSTDISSSVLEKMKLEFEYWYPFDLRVSGKDLIQNHLTFCLYNHTAIFPKR 180
Query: 703 HWPRGFRCNGHIMLNNNKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFE 762
HWPRG+RCNGH+MLN+ KMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFE
Sbjct: 181 HWPRGYRCNGHLMLNSEKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFE 240
Query: 763 TANAAILGLTKEIAWYEEILAAESSMRTGPPSTYADRVFANEINIAVKTTEQNYSNYMFR 822
TANAAIL LTKE+ W+EE L AESSMRTGPPS YADRVFANEINIAVKTTEQNYSNYMFR
Sbjct: 241 TANAAILRLTKELTWFEETLDAESSMRTGPPSIYADRVFANEINIAVKTTEQNYSNYMFR 300
Query: 823 EALKTGFYGLQTARDEYRFSCGVGGYNRELVWRFMDGQTRLLAPICPHYAEFIWRELLKK 882
EALKTGFY LQ ARDEYR SCG G+NR+LV RFMD QTRLLAPICPHYAEFIWRE+LKK
Sbjct: 301 EALKTGFYDLQAARDEYRLSCGASGFNRDLVRRFMDVQTRLLAPICPHYAEFIWREILKK 360
Query: 883 DGFVVKAGWPTADAPDLTLKRANEYLQESIGMMRXXXXXXXXXXXXXXXXXXPVASVAEN 942
DGFVVKAGWPTADAPDLTLK AN+YLQ+SI ++R PV E
Sbjct: 361 DGFVVKAGWPTADAPDLTLKSANKYLQDSIVLIRKLLQKQLSGSKKGNKKGAPVVVPTEI 420
Query: 943 KVTGLVYVNEQFDGWKAECLNILQNKFNKDTRTFAPDSEILEALQHSSVGQSSNFKQTQK 1002
K T LVYVNEQFDGWKAECL ILQN FN+D+RTFAPDSEI+ ALQ SSVGQSS+FK+TQK
Sbjct: 421 KFTCLVYVNEQFDGWKAECLKILQNSFNEDSRTFAPDSEIMAALQQSSVGQSSDFKRTQK 480
Query: 1003 QCMPFLRFQKEQAIKLGAQALDLRLPFGEIEVLQENLDLIKRQINLEH---VEIXXXXXX 1059
CMPFLRF+K++AI LGAQAL+LRLPFGEIEVL+ENLD IKRQI + VEI
Sbjct: 481 LCMPFLRFKKDEAIALGAQALNLRLPFGEIEVLRENLDSIKRQIGSKEVVDVEILSAADA 540
Query: 1060 XXXXKAGPLASLLNQNPPSPGKPTAIFL 1087
KAG ASLL NPPSPG PTA+FL
Sbjct: 541 DSLAKAGSHASLLRDNPPSPGSPTAVFL 568
>Medtr3g058540.1 | leucyl-tRNA synthetase | HC |
chr3:23262925-23261384 | 20130731
Length = 513
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/517 (80%), Positives = 447/517 (86%), Gaps = 11/517 (2%)
Query: 1 MASEGGGGAGKSFARRDRLREIEAKVQKWWEDGQVFKSEPGDAPPKPGEKFFGNFPFPYM 60
MASE +SF RRDRLREIE+KVQKWWE+ QVFKSEPG+ PP+ GEKFFGNFPFPYM
Sbjct: 1 MASE----TSRSFVRRDRLREIESKVQKWWEEKQVFKSEPGNKPPQEGEKFFGNFPFPYM 56
Query: 61 NGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQCFGD-- 118
NGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQ FG+
Sbjct: 57 NGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQFGNPP 116
Query: 119 -----XXXXXXXXXXXXXXXXXXDDANEXXXXXXXXXXXXXXXXXTGTQVYQWEIMRSVG 173
+D NE +G QVYQWEIMRSVG
Sbjct: 117 VFPEEIDELENLTVVDKDKNAGGNDENENAVAGKFKGKKSKVAAKSGGQVYQWEIMRSVG 176
Query: 174 ISDDEISKFQDPYKWLSYFPPLAVEDLKAFGLGCDWRRSFITTDMNPYFDSFVRWQVRKL 233
ISD EIS+FQDPYKWLSYFPPLAV+DLKAFG GCDWRRSFITTDMNPYFD+FVRW +RKL
Sbjct: 177 ISDAEISEFQDPYKWLSYFPPLAVDDLKAFGFGCDWRRSFITTDMNPYFDAFVRWHMRKL 236
Query: 234 KSMGKIVKDVRYTIFSPLDGQPCADHDRASGEGVQPQEYTVIKMELIAPFPSKFEVLEGK 293
K+ GK+VKDVRYT+FSPLDGQPCADHDRASGEGVQPQEYT+IKME+++PFP KF+VLEGK
Sbjct: 237 KASGKVVKDVRYTVFSPLDGQPCADHDRASGEGVQPQEYTIIKMEVVSPFPEKFKVLEGK 296
Query: 294 KVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVMAHRAALNLAYQNHSRVPEK 353
KVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFV+AHRAALNLAYQNHSRVP+K
Sbjct: 297 KVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVVAHRAALNLAYQNHSRVPQK 356
Query: 354 PTCLLELTGHDLIGLPLRSPLSFNDTIYALPMLSILMDKGTGVVTSVPSDAPDDYMALHD 413
PTCLLELTG DLIGLP++SPLS N+ IY LPMLSILMDKGTGVVTSVPSD+PDDYMAL D
Sbjct: 357 PTCLLELTGQDLIGLPVKSPLSLNEIIYVLPMLSILMDKGTGVVTSVPSDSPDDYMALQD 416
Query: 414 LKSKPAFRAKFGVKDEWVMPFEIVPIIEVPEFGNKCAETVCLQMKIKSQNEKEKLAEAKK 473
LKSK AFRAKFGVKDEWV+PFE++PIIEVP FGNKCAETVCLQMKIKSQNEK+KLAEAKK
Sbjct: 417 LKSKAAFRAKFGVKDEWVLPFEVLPIIEVPPFGNKCAETVCLQMKIKSQNEKDKLAEAKK 476
Query: 474 QTYLKGFTEGTMIVGEFAGKKVQEAKPLIRSKLLEIG 510
QTYLKGFT+GTMIVGEF KKVQEAKPLIRSKLLE G
Sbjct: 477 QTYLKGFTDGTMIVGEFKDKKVQEAKPLIRSKLLETG 513
>Medtr6g027620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC |
chr6:9605327-9589286 | 20130731
Length = 980
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 104/477 (21%), Positives = 197/477 (41%), Gaps = 92/477 (19%)
Query: 482 EGTM--IVGEFAGKKVQEAKPLIRSKLLEIGQAIVYSEPEKRVMSRS--GDECVVAL-TD 536
+GT+ + G ++G E + + ++L E G V EP + RS G E + L +
Sbjct: 370 DGTLNEVAGLYSGLDRFEVRKKMWAELEETGLG-VKKEPHTLRVPRSQRGGEVIEPLVSK 428
Query: 537 QWYITYGESEWQKLAEERLSS-----MSLFSDETRHGFEHTLSWLNQWACSRSFGLGTRI 591
QW+++ + LAE+ L + +++ + + H LS + W SR G RI
Sbjct: 429 QWFVSM-----EPLAEKALQAVEKGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRI 483
Query: 592 P-W-------DEQFLVESLSDSTIYMAYYTVVHYLQNGDMYGSSQSSIKPQQLTDDVWDY 643
P W +E ++V +D + A+ Y ++ ++Y DV D
Sbjct: 484 PVWYIEGKDKEEDYIVARNTDEALEKAHK---KYGKDVEIYQDP-----------DVLDT 529
Query: 644 IFCDGPFPKST----DISSSLLEKMKKEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIM 699
F +P ST D+S+ ++F+ +YP + +G D++ + +
Sbjct: 530 WFSSALWPFSTLGWPDLSA-------EDFKTFYPTTMLETGHDILFFWVARMVMMGIEFT 582
Query: 700 SKHHWPRGFRCNGHIM-LNNNKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDAN 758
K + + +G I KMSK+ GN I++F DA RF++A G D N
Sbjct: 583 GKVPFSYIY-LHGLIRDSQGRKMSKTLGNVIDPLDTIKDFGTDALRFTVA-LGTAGQDLN 640
Query: 759 FVFE--TANAA------------ILGLTKE--IAWYEEILA----AESSMRTGP-PSTYA 797
E T+N A + L KE ++ +E IL+ E S+ P P +
Sbjct: 641 LSTERLTSNKAFTNKLWNAGKFVLQNLPKENDVSAWENILSYKFDTEDSVLNLPLPECWV 700
Query: 798 DRVFANEINIAVKTTEQNYSNYMFREALKTGF---------YGLQTARDEYRFSCGVGGY 848
+++++ +++ NY + F E + + + ++ ++ ++ G GG
Sbjct: 701 ----VSKLHLLIESATANYDKFFFGEVGRETYDFFWADFADWYIEASKGRL-YNSGNGGN 755
Query: 849 NRELVWRFM-----DGQTRLLAPICPHYAEFIWRELLKKDGFVVKAGWPTADAPDLT 900
+ L+ + + + ++L P P E +W+ L + ++ WP P T
Sbjct: 756 SAALMAQAVLLYTFENILKVLHPFMPFVTEELWQALPNRKHALIVTPWPETKLPRCT 812
>Medtr4g132500.2 | leucyl-tRNA synthetase | HC |
chr4:55397369-55386514 | 20130731
Length = 970
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 11 KSFARRDRLREIEAKVQKWWEDGQVFKSEPGDA--PPKPGEKFFGNFPFPYMNGYLHLGH 68
K R EIE K Q++W++ F++ D KP FP+P G LH+GH
Sbjct: 74 KPVNRAYPFHEIEPKWQRFWDEFCTFRTPDDDDIDTSKPKYYILDMFPYPSGAG-LHVGH 132
Query: 69 AFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASA 106
+ + A F R++G NVL P + G+P + A
Sbjct: 133 PLGYTATDILARFKRMQGYNVLHPMGWDAFGLPAEQYA 170
>Medtr4g132500.1 | leucyl-tRNA synthetase | HC |
chr4:55397313-55386514 | 20130731
Length = 970
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 11 KSFARRDRLREIEAKVQKWWEDGQVFKSEPGDA--PPKPGEKFFGNFPFPYMNGYLHLGH 68
K R EIE K Q++W++ F++ D KP FP+P G LH+GH
Sbjct: 74 KPVNRAYPFHEIEPKWQRFWDEFCTFRTPDDDDIDTSKPKYYILDMFPYPSGAG-LHVGH 132
Query: 69 AFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASA 106
+ + A F R++G NVL P + G+P + A
Sbjct: 133 PLGYTATDILARFKRMQGYNVLHPMGWDAFGLPAEQYA 170