Miyakogusa Predicted Gene

Lj3g3v3026740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3026740.1 Non Characterized Hit- tr|C5XVQ2|C5XVQ2_SORBI
Putative uncharacterized protein Sb04g023870
OS=Sorghu,38.12,2e-19,NAP-like,NULL; NAP,Nucleosome assembly protein
(NAP); SUBFAMILY NOT NAMED,NULL; TESTIS-SPECIFIC Y-EN,gene.g50169.t1.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g108570.1 | nucleosome/chromatin assembly factor group pro...   163   6e-41
Medtr4g108570.2 | nucleosome/chromatin assembly factor group pro...   163   7e-41
Medtr3g040400.1 | nucleosome/chromatin assembly factor group pro...   163   9e-41
Medtr4g115160.1 | nucleosome assembly protein | LC | chr4:475269...   120   6e-28
Medtr4g115160.2 | nucleosome assembly protein | LC | chr4:475269...   120   6e-28
Medtr0240s0030.1 | nucleosome/chromatin assembly factor group pr...    78   5e-15
Medtr6g090475.1 | nucleosome assembly protein | LC | chr6:343872...    68   3e-12
Medtr4g115820.1 | nucleosome assembly protein | HC | chr4:478677...    67   7e-12
Medtr2g024970.1 | nucleosome assembly protein | LC | chr2:883928...    53   2e-07

>Medtr4g108570.1 | nucleosome/chromatin assembly factor group
           protein | HC | chr4:44984273-44980061 | 20130731
          Length = 254

 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 111/180 (61%), Gaps = 20/180 (11%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +++  Y E  K  Y +R++II SIP FW     L HP
Sbjct: 26  IEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNA-FLSHP 84

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
              +L N ED KIF+Y +SLEVED+ DV S Y+IT NF PNPYFE++KL KT TF +EGT
Sbjct: 85  TLSELLNDEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGT 144

Query: 116 TKITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEFQYLI 161
           T+ITATPIKWK+              N + P D  F SWF   EQKDD+  IHDE   LI
Sbjct: 145 TEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELI 204


>Medtr4g108570.2 | nucleosome/chromatin assembly factor group
           protein | HC | chr4:44984273-44980061 | 20130731
          Length = 266

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 111/180 (61%), Gaps = 20/180 (11%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +++  Y E  K  Y +R++II SIP FW     L HP
Sbjct: 26  IEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNA-FLSHP 84

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
              +L N ED KIF+Y +SLEVED+ DV S Y+IT NF PNPYFE++KL KT TF +EGT
Sbjct: 85  TLSELLNDEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGT 144

Query: 116 TKITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEFQYLI 161
           T+ITATPIKWK+              N + P D  F SWF   EQKDD+  IHDE   LI
Sbjct: 145 TEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELI 204


>Medtr3g040400.1 | nucleosome/chromatin assembly factor group
           protein | HC | chr3:14196167-14201171 | 20130731
          Length = 260

 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 113/180 (62%), Gaps = 20/180 (11%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D+I  I+  A     +++  Y E  K  Y +R+ +I SIP FW T   L HP
Sbjct: 29  IEKLQEIQDEIEKINEEASDKVLEIEQKYNEVRKPVYDKRNDVIKSIPDFWLTA-FLSHP 87

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
               L N+ED KIF++  SLEVED  DV S YSITFNF  NPYFE++KL KT TFL+EGT
Sbjct: 88  VLGDLLNEEDQKIFKHLISLEVEDHKDVKSGYSITFNFNSNPYFEDSKLVKTFTFLEEGT 147

Query: 116 TKITATPIKWKQNNQVP--------------ADFGFFSWFTMTEQKDDVHHIHDEFQYLI 161
           TK+TATPIKWK+   +P              +D  FF+WF  TEQKD++  IHDE   +I
Sbjct: 148 TKLTATPIKWKEGKGIPNGVSHEKKGNKRAASDISFFTWFCDTEQKDEMGDIHDEIAEMI 207


>Medtr4g115160.1 | nucleosome assembly protein | LC |
           chr4:47526912-47532730 | 20130731
          Length = 355

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 38/176 (21%)

Query: 2   EKLEEMEDKINLIHMMAFQVDDYKERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLF 61
           ++L E+E K+N             E +   Y +R ++I SIP FW     L+HP  +++ 
Sbjct: 145 DQLREIEQKLN-------------ETIDPVYIKRDEMIKSIPNFWLNA-FLRHPTLKKVM 190

Query: 62  NQEDHKIFQYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTT---- 116
           N+ED KIF+Y +SL++    D+ S+ +  T  F PNPYFE++KL K  T+L EGTT    
Sbjct: 191 NEEDQKIFKYLSSLDIRAHKDIKSACTTFTLKFNPNPYFEDSKLSKIFTYLLEGTTDHPL 250

Query: 117 -----KITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHI 153
                 ITATPI+WK+              NN+ P D  F SWF   EQKDD+ +I
Sbjct: 251 RWKVGNITATPIRWKEVKGIPDGTDHEEKGNNRAPVDVRFLSWFCDCEQKDDMAYI 306


>Medtr4g115160.2 | nucleosome assembly protein | LC |
           chr4:47526912-47532730 | 20130731
          Length = 367

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 38/176 (21%)

Query: 2   EKLEEMEDKINLIHMMAFQVDDYKERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLF 61
           ++L E+E K+N             E +   Y +R ++I SIP FW     L+HP  +++ 
Sbjct: 145 DQLREIEQKLN-------------ETIDPVYIKRDEMIKSIPNFWLNA-FLRHPTLKKVM 190

Query: 62  NQEDHKIFQYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTT---- 116
           N+ED KIF+Y +SL++    D+ S+ +  T  F PNPYFE++KL K  T+L EGTT    
Sbjct: 191 NEEDQKIFKYLSSLDIRAHKDIKSACTTFTLKFNPNPYFEDSKLSKIFTYLLEGTTDHPL 250

Query: 117 -----KITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHI 153
                 ITATPI+WK+              NN+ P D  F SWF   EQKDD+ +I
Sbjct: 251 RWKVGNITATPIRWKEVKGIPDGTDHEEKGNNRAPVDVRFLSWFCDCEQKDDMAYI 306


>Medtr0240s0030.1 | nucleosome/chromatin assembly factor group
           protein | LC | scaffold0240:10090-10820 | 20130731
          Length = 86

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 28  LKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLFNQEDHKIF-QYFTSLEVEDDMDVNSS 86
           LK    +R K++ ++P FW       HP    L N +DH+IF +Y +S+EVED+ DV+++
Sbjct: 3   LKVLTDKRGKVLKTVPKFWLHA-FTAHPIIVNLLNNKDHEIFDEYLSSIEVEDNQDVSTA 61

Query: 87  YSITFNFKPNPYFENTKLQKTLTFL 111
           YSITFNF  N YF+N  + K++ F+
Sbjct: 62  YSITFNFNDNAYFDNQSIAKSIIFI 86


>Medtr6g090475.1 | nucleosome assembly protein | LC |
           chr6:34387203-34387897 | 20130731
          Length = 159

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 70  QYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGTTKITATPIKWKQNN 129
           +Y  S+EVED+ D  S YSITFNF  NPYF+N  L K+LTF +    +  AT I+WK+  
Sbjct: 37  EYLNSIEVEDNQDAKSGYSITFNFDENPYFDNPSLAKSLTFHEGKLKETKATTIQWKKGK 96

Query: 130 QVP 132
            +P
Sbjct: 97  SMP 99


>Medtr4g115820.1 | nucleosome assembly protein | HC |
           chr4:47867787-47865364 | 20130731
          Length = 136

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 11/74 (14%)

Query: 70  QYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTTK----------I 118
           +Y +SL++  + D+ S+ +  T NF PNPYFE++ L KT  +L+EGTTK          I
Sbjct: 5   EYLSSLDIRANKDIKSANTTFTLNFNPNPYFEDSLLSKTFAYLREGTTKDYPIRWKEGNI 64

Query: 119 TATPIKWKQNNQVP 132
           TATPI+WK+   +P
Sbjct: 65  TATPIRWKEGKGIP 78


>Medtr2g024970.1 | nucleosome assembly protein | LC |
           chr2:8839286-8837880 | 20130731
          Length = 215

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 26  ERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLFNQEDHKIFQ-YFTSLEVEDDMDVN 84
           ++L    + R + I  + GFWF V+        QL N+ D +I + + TS+EV  D D  
Sbjct: 66  DKLTVHCRNRKEQIARLSGFWFNVIKADLNLVSQL-NKTDSEILENHLTSIEVVYDADSK 124

Query: 85  SSYSITFNFKPNPYFENTKLQKTLTFLQEGTTKITATPIKWKQN--NQVP 132
             +SI F+F  N YF N ++ K   F         +T I WK+   N VP
Sbjct: 125 LKFSIIFDFIKNEYFSNDRIFKRFNFRDGVLISTESTCINWKKEILNIVP 174