Miyakogusa Predicted Gene

Lj3g3v3016620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3016620.1 tr|B9MYK7|B9MYK7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594846 PE=4
SV=1,53.85,4e-18,DUF296,Domain of unknown function DUF296; no
description,NULL,gene.g50159.t1.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g055813.1 | AT-hook DNA-binding family protein, putative |...   101   2e-22
Medtr4g055803.1 | AT hook motif DNA-binding family protein | HC ...   101   2e-22
Medtr4g055833.1 | AT hook motif DNA-binding family protein | LC ...    99   9e-22
Medtr4g055705.1 | AT hook motif DNA-binding family protein | LC ...    73   1e-13
Medtr1g061530.1 | AT hook motif DNA-binding family protein | HC ...    49   1e-06

>Medtr4g055813.1 | AT-hook DNA-binding family protein, putative | LC
           | chr4:20374397-20372478 | 20130731
          Length = 285

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 18/136 (13%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSM 61
           K   L+VSLAKP+G VFGG VE++LIAA P QLILATFKQ ISNQIK++ S+  S   +M
Sbjct: 96  KIGMLSVSLAKPNGEVFGGGVENTLIAATPTQLILATFKQTISNQIKRKDSSLPSTAANM 155

Query: 62  AGNPDSTKVDLQKVPKL-TEGESSCPSPTSTLRLIAPSNGLVDDPITETTNAVPENVTI- 119
             N DS K +  KVPKL TEG  SC +PT+T      +NG++          V +NVTI 
Sbjct: 156 LTNQDSAKENNSKVPKLTTEGGPSCLTPTTT-----NTNGVI----------VEDNVTIV 200

Query: 120 ADKNMHFESVSGVDLE 135
           AD+N+  +S+  +DL+
Sbjct: 201 ADENVQSDSIV-IDLD 215


>Medtr4g055803.1 | AT hook motif DNA-binding family protein | HC |
           chr4:20369415-20364559 | 20130731
          Length = 442

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 18/138 (13%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSM 61
           K   L+VSLAKP+G VFGG VE++LIAA P QLILATFKQ ISNQIK++ S+  S   +M
Sbjct: 206 KIGMLSVSLAKPNGEVFGGGVENTLIAATPTQLILATFKQTISNQIKRKHSSLPSTAANM 265

Query: 62  AGNPDSTKVDLQKVPKL-TEGESSCPSPTSTLRLIAPSNGLVDDPITETTNAVPENVTI- 119
             N DS K +  KVPKL TEG  SC +PT+T      +NG++          V +NVTI 
Sbjct: 266 LTNQDSAKENNSKVPKLTTEGGPSCLTPTTT-----NTNGVI----------VEDNVTIV 310

Query: 120 ADKNMHFESVSGVDLEYH 137
           AD+N+  +S+  +DL+  
Sbjct: 311 ADENVQSDSIV-IDLDSQ 327


>Medtr4g055833.1 | AT hook motif DNA-binding family protein | LC |
           chr4:20389707-20385250 | 20130731
          Length = 346

 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 81/138 (58%), Gaps = 19/138 (13%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSM 61
           K   L+VSLAKP+G VFGG VE++LIAA P QLIL TFKQ ISNQIK++ S+  S  P+M
Sbjct: 203 KICMLSVSLAKPNGEVFGGGVENTLIAASPTQLILVTFKQTISNQIKRKHSSLPSTAPNM 262

Query: 62  AGNPDSTKVDLQKVPKL-TEGESSCPSPTSTLRLIAPSNGLVDDPITETTNAVPENVTI- 119
             N DS K +  KVPKL TEGE SC               L           V +NVTI 
Sbjct: 263 LTNQDSAKENTSKVPKLTTEGEPSC---------------LTATTTNTNGAIVEDNVTIA 307

Query: 120 ADKNMHFESV--SGVDLE 135
           AD+N+  +S+    +DLE
Sbjct: 308 ADENVQSDSIRCKCIDLE 325


>Medtr4g055705.1 | AT hook motif DNA-binding family protein | LC |
           chr4:20348007-20344231 | 20130731
          Length = 303

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSM 61
           K   L+VSLA+PDG VFGG V++ LIAA  +++ILAT K+NI    K+  ++ SS  P+M
Sbjct: 218 KIGMLSVSLAQPDGKVFGGRVDNLLIAATTVKIILATCKKNIK---KRMYASTSSAAPNM 274

Query: 62  AGNPDSTKVDLQKVPKLT-EGESSCP 86
           A N ++ + +  K PKLT EGE SCP
Sbjct: 275 ATNQEAIRDNNSKGPKLTIEGEPSCP 300


>Medtr1g061530.1 | AT hook motif DNA-binding family protein | HC |
           chr1:26849527-26846015 | 20130731
          Length = 362

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRR 51
           +   L+VSLA PDG V GG V   LIAAGPIQ+++ +F  N +N    +R
Sbjct: 220 REGGLSVSLAGPDGRVIGGAVAGVLIAAGPIQIVVGSFMSNGNNSKPLKR 269