Miyakogusa Predicted Gene

Lj3g3v3006550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3006550.1 tr|F2D013|F2D013_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,57.14,0.018,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; U2AUXFACTOR,U2 auxiliary
factor small subunit; ,NODE_63306_length_883_cov_103.347679.path2.1
         (283 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084715.2 | splicing factor U2af small subunit A-like prot...   364   e-101
Medtr2g084715.1 | splicing factor U2af small subunit A-like prot...   364   e-101
Medtr2g084715.3 | splicing factor U2af small subunit A-like prot...   364   e-101
Medtr7g103630.1 | splicing factor U2af small subunit A-like prot...   341   4e-94
Medtr1g035130.6 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr1g035130.3 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr1g035130.1 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr1g035130.4 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr1g035130.2 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr1g035130.5 | splicing factor U2af small subunit A-like prot...   339   2e-93
Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC...   129   2e-30

>Medtr2g084715.2 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927010-35930737 | 20130731
          Length = 324

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 164/186 (88%), Positives = 178/186 (95%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPRKIQ HF++FY+DLFDELSKYG +++LNVCDNLADHMVGNVY QFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HA  A+KNLTGRFYAG PIIVDFSPVTDFREATCRQYEE++CNRGGYCNFMHLK+ISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRELFG 186
           RR+LFG
Sbjct: 181 RRQLFG 186



 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 255 ARDGSEERRARIEQWNREREEQKHESKVS 283
            RDGSEERRARIEQWNREREE++  SKV+
Sbjct: 264 VRDGSEERRARIEQWNREREEKEPASKVN 292


>Medtr2g084715.1 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35929938 | 20130731
          Length = 324

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 164/186 (88%), Positives = 178/186 (95%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPRKIQ HF++FY+DLFDELSKYG +++LNVCDNLADHMVGNVY QFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HA  A+KNLTGRFYAG PIIVDFSPVTDFREATCRQYEE++CNRGGYCNFMHLK+ISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRELFG 186
           RR+LFG
Sbjct: 181 RRQLFG 186



 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 255 ARDGSEERRARIEQWNREREEQKHESKVS 283
            RDGSEERRARIEQWNREREE++  SKV+
Sbjct: 264 VRDGSEERRARIEQWNREREEKEPASKVN 292


>Medtr2g084715.3 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35930729 | 20130731
          Length = 324

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 164/186 (88%), Positives = 178/186 (95%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPRKIQ HF++FY+DLFDELSKYG +++LNVCDNLADHMVGNVY QFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HA  A+KNLTGRFYAG PIIVDFSPVTDFREATCRQYEE++CNRGGYCNFMHLK+ISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRELFG 186
           RR+LFG
Sbjct: 181 RRQLFG 186



 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 255 ARDGSEERRARIEQWNREREEQKHESKVS 283
            RDGSEERRARIEQWNREREE++  SKV+
Sbjct: 264 VRDGSEERRARIEQWNREREEKEPASKVN 292


>Medtr7g103630.1 | splicing factor U2af small subunit A-like protein
           | HC | chr7:41947426-41950345 | 20130731
          Length = 327

 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 206/296 (69%), Gaps = 22/296 (7%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTL+LSNMYQRPD+   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60

Query: 61  GVDAQG--------------QPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLAD 106
            ++                 + +DP K+Q HFDDFY+DLF+ELSKYG++Q+LN+CDNLAD
Sbjct: 61  FINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLAD 120

Query: 107 HMVGNVYAQFREEEHAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGG 166
           HMVGNVY Q++EE+HAA AL NLTGRFY+G PIIVDFSPVTDFREATCRQYEE+ CNRGG
Sbjct: 121 HMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGG 180

Query: 167 YCNFMHLKKISRELRRELFGMDNR---GRHG-RSRSPDRHRSNEDRSPRGHS---RKYDX 219
           YCNFMHLKKISR+LR+ LFG  +R    R G RSRSP R+R+ E RS  G     R  D 
Sbjct: 181 YCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDR 240

Query: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-RDGSEERRARIEQWNRERE 274
                                                R+ S ERRARIEQWNRE+E
Sbjct: 241 SHGSHGRRPRSRSPRHRGRRSRSPVGRDRSPNPVRGERESSVERRARIEQWNREKE 296


>Medtr1g035130.6 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.3 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.1 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643125-12639099 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.4 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639099 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.2 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639591 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.5 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12641860 | 20130731
          Length = 279

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 170/185 (91%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDI+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD  GQPIDPR+IQ HF+DFY+D+F ELSK+G ++TLNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL +L GRFY G PI+ DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+KKI REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRELF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC |
           chr2:162220-168024 | 20130731
          Length = 827

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 5/167 (2%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTPGVDAQGQP 68
           FGTE D+ +CPF+ K  ACR GDRCSR+H  P  S TLL+ NMY  P +       +G  
Sbjct: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWE--QDEGLE 241

Query: 69  IDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEEHAAEALKN 128
               +++  F++FY+D+  E  K+G +    VC N + H+ GNVY Q++  + A  A  +
Sbjct: 242 YTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNS 301

Query: 129 LTGRFYAGNPIIVDFSPVTDFREATCRQYEED---SCNRGGYCNFMH 172
           + GR++AG  +   F  +T ++ A C +Y +    +C+ G  CNF+H
Sbjct: 302 VNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIH 348