Miyakogusa Predicted Gene

Lj3g3v3006470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3006470.1 Non Characterized Hit- tr|I1HFP1|I1HFP1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,39.39,9e-19,FAMILY NOT NAMED,NULL; seg,NULL,CUFF.45192.1
         (297 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g055440.1 | histone deacetylase HDT2, putative | HC | chr4...   144   1e-34
Medtr2g084815.3 | histone deacetylase 2a, putative | HC | chr2:3...   127   1e-29
Medtr4g055450.1 | histone deacetylase, putative | HC | chr4:2020...   120   2e-27
Medtr2g084815.1 | histone deacetylase 2a, putative | HC | chr2:3...   112   4e-25
Medtr2g084815.2 | histone deacetylase 2a, putative | HC | chr2:3...    86   5e-17
Medtr2g084815.4 | histone deacetylase 2a, putative | HC | chr2:3...    62   6e-10
Medtr8g069135.1 | hypothetical protein | HC | chr8:28944606-2894...    57   2e-08

>Medtr4g055440.1 | histone deacetylase HDT2, putative | HC |
           chr4:20198703-20202553 | 20130731
          Length = 267

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 84/104 (80%), Gaps = 1/104 (0%)

Query: 1   MEAPMEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKK 60
           M+ PMEFWGVEVK GQ+VKV+P++   GYIHISQ ALGE  KK +A+E V+LYLKV D K
Sbjct: 1   MDRPMEFWGVEVKAGQSVKVDPNDQCTGYIHISQVALGEG-KKGEASESVVLYLKVADMK 59

Query: 61  YVLGTLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYKVLT 104
           +V+GTL +D  P  ++++VLD +SELSHNSKGASV+F GYK++ 
Sbjct: 60  FVIGTLTKDSFPQTTLNIVLDGESELSHNSKGASVHFSGYKLIC 103



 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 207 TPAKKVDQGK--KRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKT 261
           TPAKKVD+GK  KR NE+ S+TPV  KKAK+ATPEK DGKK+VH ATPHP K+ GKT
Sbjct: 179 TPAKKVDEGKNKKRTNETGSQTPVPTKKAKDATPEKTDGKKSVHIATPHPMKKGGKT 235


>Medtr2g084815.3 | histone deacetylase 2a, putative | HC |
           chr2:35979128-35982308 | 20130731
          Length = 243

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 77/97 (79%), Gaps = 1/97 (1%)

Query: 5   MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
           MEFWG EVKVG+T+K++P +     IHISQ ALGEA KKDK  E V++YLKV ++K VLG
Sbjct: 1   MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEA-KKDKPNESVVIYLKVGEQKLVLG 59

Query: 65  TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYK 101
           TL +D IP +S+D+VL+ + ELSHNSK ASV+FCGYK
Sbjct: 60  TLTKDKIPQISLDIVLEKEFELSHNSKAASVHFCGYK 96


>Medtr4g055450.1 | histone deacetylase, putative | HC |
           chr4:20204358-20207970 | 20130731
          Length = 360

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 71/103 (68%), Gaps = 13/103 (12%)

Query: 1   MEAPMEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKK 60
           ME   EFWGVEVKVGQ+VKV+P++   GYIHISQ ALGE  KKDKA            K 
Sbjct: 1   MEPLSEFWGVEVKVGQSVKVDPNDLCEGYIHISQVALGE-VKKDKA------------KS 47

Query: 61  YVLGTLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYKVL 103
             LGTL +D IP ++MD+ LDD+SELSHNSK A+VYF GYK  
Sbjct: 48  LFLGTLIKDTIPQIAMDIFLDDESELSHNSKNATVYFSGYKAF 90



 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 42/57 (73%), Gaps = 2/57 (3%)

Query: 207 TPAKKVDQGK--KRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKT 261
           TPAKKVDQGK  +R NE+ S+T V  KKAK ATP K D KK VH ATPHP K+ GKT
Sbjct: 272 TPAKKVDQGKNRERSNEALSQTLVLTKKAKIATPVKTDDKKYVHIATPHPMKKGGKT 328


>Medtr2g084815.1 | histone deacetylase 2a, putative | HC |
          chr2:35979205-35982051 | 20130731
          Length = 279

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 70/90 (77%), Gaps = 1/90 (1%)

Query: 5  MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
          MEFWG EVKVG+T+K++P +     IHISQ ALGEA KKDK  E V++YLKV ++K VLG
Sbjct: 1  MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEA-KKDKPNESVVIYLKVGEQKLVLG 59

Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGAS 94
          TL +D IP +S+D+VL+ + ELSHNSK A+
Sbjct: 60 TLTKDKIPQISLDIVLEKEFELSHNSKAAN 89



 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 48/55 (87%), Gaps = 1/55 (1%)

Query: 207 TPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKT 261
           TP KKVDQGKKRPNESASKTP+S KK+KNATPEK DGKK  HTATPHPKK  GKT
Sbjct: 186 TPVKKVDQGKKRPNESASKTPISSKKSKNATPEKTDGKKAGHTATPHPKK-GGKT 239


>Medtr2g084815.2 | histone deacetylase 2a, putative | HC |
           chr2:35979101-35982483 | 20130731
          Length = 302

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 48/55 (87%), Gaps = 1/55 (1%)

Query: 207 TPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKT 261
           TP KKVDQGKKRPNESASKTP+S KK+KNATPEK DGKK  HTATPHPKK  GKT
Sbjct: 209 TPVKKVDQGKKRPNESASKTPISSKKSKNATPEKTDGKKAGHTATPHPKK-GGKT 262


>Medtr2g084815.4 | histone deacetylase 2a, putative | HC |
           chr2:35979103-35982463 | 20130731
          Length = 247

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 207 TPAKKVDQGKKRPNESASKTPVSGKKAKNATPEK 240
           TP KKVDQGKKRPNESASKTP+S KK+KNATPEK
Sbjct: 209 TPVKKVDQGKKRPNESASKTPISSKKSKNATPEK 242


>Medtr8g069135.1 | hypothetical protein | HC |
           chr8:28944606-28940793 | 20130731
          Length = 327

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 37/57 (64%), Gaps = 7/57 (12%)

Query: 207 TPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKPDGKKNVHTAT------PHPKKQ 257
           TP KKVDQGKKRPNESASKTPVS KK KNATPEK +     H         PH  KQ
Sbjct: 88  TPVKKVDQGKKRPNESASKTPVS-KKTKNATPEKTEHYLQEHCEVSKKYPAPHGLKQ 143