Miyakogusa Predicted Gene
- Lj3g3v2995970.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2995970.2 tr|G7JKW4|G7JKW4_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_4g054980 PE=3 SV=1,84.59,0,seg,NULL; DNA/RNA
polymerases,NULL; Ribonuclease H-like,Ribonuclease H-like domain; DNA
polymerase t,CUFF.45134.2
(1897 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g054980.1 | DNA polymerase epsilon catalytic subunit A | H... 3460 0.0
>Medtr4g054980.1 | DNA polymerase epsilon catalytic subunit A | HC |
chr4:19992779-19966992 | 20130731
Length = 2203
Score = 3460 bits (8972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1644/1878 (87%), Positives = 1757/1878 (93%), Gaps = 9/1878 (0%)
Query: 16 SKKQKLIRNAEEELEAKLGFDVFSEGKKRLGWLLTFASSSWEDNDTNKVFSCVDLYFVTQ 75
SKKQKL+ +AEEELEAKLGFD+FSEG+KRLGWLLTF+SSS+ED DT KV+SC+DLYFV Q
Sbjct: 13 SKKQKLLNSAEEELEAKLGFDLFSEGEKRLGWLLTFSSSSYEDEDTGKVYSCIDLYFVKQ 72
Query: 76 DGSTFKSKYRFRPYFYAATKDKMEMDVDAYLRRRYEGQIADIEIMEKEDLDLKNHLSGLR 135
DGS+FK+KYRFRPYFY ATK+KMEMDVDAYLRRRYE QIADI+I+EKEDLDLKNHLSGLR
Sbjct: 73 DGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLR 132
Query: 136 KSYLKLSFDTVQQLMNVKRDLMHVVERNQAKSDAAEAYESILTGRRRDEKPQDFLDCIVD 195
KSYL+LSFDTVQQLMNVK DLM VVERN+AKSDAAEAYESILTGRR ++K QDFLDCI+D
Sbjct: 133 KSYLRLSFDTVQQLMNVKSDLMQVVERNKAKSDAAEAYESILTGRR-EQKLQDFLDCIID 191
Query: 196 LREYDVPYHVRFAIDKDIRCGQWYDVGVSNNEVTLEKRTDLLQRAEVRICAFDIETTKLP 255
LREYDVPYHVRFAID DIRCGQWYDVGVSN+ VTLE+RTDLLQRAEVR+CAFDIETTKLP
Sbjct: 192 LREYDVPYHVRFAIDNDIRCGQWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLP 251
Query: 256 LKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGYFKVTNVLNEIE 315
LKFPDADYD VMMISYMVD QGYLI NRECVGDDIEDLE+TPKPEFEG+FKVTNV NEIE
Sbjct: 252 LKFPDADYDSVMMISYMVDRQGYLITNRECVGDDIEDLEFTPKPEFEGFFKVTNVQNEIE 311
Query: 316 LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDTNQGECRAKF 375
LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHG KMSDELGFQCD NQGECRAKF
Sbjct: 312 LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKF 371
Query: 376 ACHLDCYAWVKRDSYLPQGSQNLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQTMASYSVS 435
A HLDC+AWVKRDSYLPQGSQ LKAVTKAKLGYDP EVNPEDMVRFAKEKPQ MASYSVS
Sbjct: 372 APHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPKEVNPEDMVRFAKEKPQMMASYSVS 431
Query: 436 DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKANVICPNKHQ 495
DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQ++KANVICPNKHQ
Sbjct: 432 DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQ 491
Query: 496 SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTVEPSAYEQLINNLERDLRYAI 555
SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFT+EPSA+EQLI+NL+RDL+YAI
Sbjct: 492 SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLISNLDRDLQYAI 551
Query: 556 EVEGKMDLKSVSNYEEVKNAIREKLLQLRDTPIREECPLIYHLDVAAMYPNIILTNRLQP 615
VEGKMDL+SVSNY+EVKNAI EKL+ LRD PIR++CPLIYHLDVAAMYPNIILTNRLQP
Sbjct: 552 RVEGKMDLESVSNYDEVKNAIMEKLVNLRDAPIRDDCPLIYHLDVAAMYPNIILTNRLQP 611
Query: 616 PSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFTYGTDGRS 675
PSIVTDEICTACDFNRPGKTCLRKLEWVWRG TF AKKSDYYHLKKQIESEF G + RS
Sbjct: 612 PSIVTDEICTACDFNRPGKTCLRKLEWVWRGATFAAKKSDYYHLKKQIESEFVDGVNERS 671
Query: 676 SKSFLDLPKLEQQSKLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR 735
SKSFLDLPK EQQ +LKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR
Sbjct: 672 SKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR 731
Query: 736 DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK 795
DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK
Sbjct: 732 DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK 791
Query: 796 GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTED 855
GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKT D
Sbjct: 792 GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTVD 851
Query: 856 SKRKLTISYPCVMLNVDVAKNNTNDQYQTLTDPIRKSYKTHSECSIEFEVDGPYKAMIIP 915
SKRKLTISYPCVMLNVDVA NNTNDQYQTLTDP RK+Y THSECSIEFEVDGPYKAMIIP
Sbjct: 852 SKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIP 911
Query: 916 ASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECY 975
ASKEEGILIKKRYAVFNDDG+LAELKGFEIKRRGELKLIKVFQA+LF+KFLHGSTL+ECY
Sbjct: 912 ASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQADLFEKFLHGSTLKECY 971
Query: 976 SVVASVANRWLDLLDNQGMDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADF 1035
S VA ANRWLDLLDNQG DIADSELLDYISESSTMSKSLADYG+QKSCAVTTA+RLADF
Sbjct: 972 SEVAKEANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADF 1031
Query: 1036 LGDTMVRDKGLKCQYIVASEPQGAPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDAGIR 1095
LGDTMV+DKGL+CQYIVASEP+G PVSERAVPVAIFETDA++MKFYVRKWCKVSSD GIR
Sbjct: 1032 LGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDADIMKFYVRKWCKVSSDVGIR 1091
Query: 1096 SIIDWSYYKQRLSSTIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKDDKFRQRKLDD 1155
SIIDWSYYKQRLSS+IQKIITIPAAMQKVANPVPRV HPDWLHKKVREK+DKFRQRK+DD
Sbjct: 1092 SIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDD 1151
Query: 1156 MFNSMNRKESSKKHDDSNGVRLVMDDETVNDLEDFGSNGRSSTGRPRPIIRHYETNNERH 1215
F SMN+ E SKKH+DS+GV LVM D+TVND+EDFG+ GRSST PRPIIRHYE NNE+H
Sbjct: 1152 TFKSMNKNEHSKKHNDSSGVNLVMVDDTVNDMEDFGNKGRSSTLGPRPIIRHYEANNEQH 1211
Query: 1216 SVNRNGQEDSEQQCNDSSSIDRPPSLSQKDEISGENIDKNVDYQGWLQLKKRKWKDMLEK 1275
S NGQEDSEQQ DSS+ID Q++E S EN+D+ VDYQGWLQLKKRKWK ML K
Sbjct: 1212 SEKFNGQEDSEQQHIDSSNID------QQNETSCENVDRTVDYQGWLQLKKRKWKSMLGK 1265
Query: 1276 RKKRRLDNSEKSDRLNGILGQINGKIDQGRSNVSSYFKRHEVVLTRCHWQIIQLIHSPQI 1335
RKK+RL+NS+KSD LNG L Q N K++ GRSNVSSYF+RHEVVLTR HWQIIQL+HSPQ+
Sbjct: 1266 RKKQRLENSKKSDHLNGSLEQTNSKMNHGRSNVSSYFRRHEVVLTRGHWQIIQLVHSPQV 1325
Query: 1336 GQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPISDEFLGKRVNKTLPHGRQSNNLYEVTIN 1395
GQFFAWVVVDGIMLKIP+S+PRVFYLNSRSP ++EF GKRVNKTLPHGR S NLYEVTIN
Sbjct: 1326 GQFFAWVVVDGIMLKIPISIPRVFYLNSRSP-TEEFSGKRVNKTLPHGRHSYNLYEVTIN 1384
Query: 1396 EVQFREASKKLEALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKRRNLQEPWNVS 1455
EVQ++E SKKL ALLADPD+EG+YETKVPLEFNAIVQLGCVCKVDK+AK+R+LQEPWN++
Sbjct: 1385 EVQYKEESKKLAALLADPDIEGVYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLN 1444
Query: 1456 ELHMKTTTECGYFEQSISFFYLYHSISEGRAIYVGYFPVSKAVTVVVVNPYQNKDLSPIF 1515
ELHMKTTTEC Y EQSIS FYLYHSISEGRAIY GYFP S+A+T VVVNPYQN+DLSP +
Sbjct: 1445 ELHMKTTTECAYLEQSISLFYLYHSISEGRAIYAGYFPGSQAITFVVVNPYQNQDLSPAY 1504
Query: 1516 LERQYHSACQALSIESPPRNDIHFKVDYVAQVKDAETAMQRTINDHRSEHHGPMVAVIEC 1575
L+RQ+ AC+ LSIE+PPRN I+FKV+YVA VKDAET MQ IND RSE HGPMVAVIEC
Sbjct: 1505 LDRQFRDACRTLSIEAPPRNGINFKVEYVALVKDAETIMQSAINDLRSE-HGPMVAVIEC 1563
Query: 1576 PNVQLVKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIAL 1635
P+VQL+KLGIRALDDFPCLSIP NARDSQY ILGWQQ+AAK+GMQRCAASVQWLNE+IAL
Sbjct: 1564 PDVQLLKLGIRALDDFPCLSIPFNARDSQYPILGWQQMAAKLGMQRCAASVQWLNEKIAL 1623
Query: 1636 SRYAHVPVGNFELDWLIFTADTFFSRALRDNQQVLWISDDGLPDLGGITGEENCFIDEVH 1695
SRYAHVP+GN E DWL+FT DTFF RALRDNQQVLWISDDG PDLGG GEENCF+DEV
Sbjct: 1624 SRYAHVPLGNMEFDWLMFTVDTFFCRALRDNQQVLWISDDGFPDLGGNIGEENCFLDEVR 1683
Query: 1696 QPVLTYPGAYRKVTVELKLHHLAVDALLKCNQVNEMEGGALLGFDHEFDSEAFSVDGQNS 1755
QPV T+PGAYRK++VELK+HHLAVDALLKCNQVNEMEGGALLGF HEFDSEAF V+GQN
Sbjct: 1684 QPVCTFPGAYRKISVELKIHHLAVDALLKCNQVNEMEGGALLGFGHEFDSEAFQVNGQNG 1743
Query: 1756 FDESTSCAHAFRVLKQLIQRCLADAVTSGNVFADAMLQHLYRWLCSPQSKLHDPALHRLL 1815
F+ESTSC HAFRVLK LIQRCLADAVTSGNVFADA+LQHLYRWLCSPQSK HDPALH+LL
Sbjct: 1744 FEESTSCTHAFRVLKHLIQRCLADAVTSGNVFADAILQHLYRWLCSPQSKFHDPALHQLL 1803
Query: 1816 HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCHSLLRTVQSRDLFE 1875
HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYD STAKAYC SLLRT+QSRDLFE
Sbjct: 1804 HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDFSTAKAYCDSLLRTIQSRDLFE 1863
Query: 1876 WIELEPLQFWLSLLFMDQ 1893
WIELEPLQFW SLLFMDQ
Sbjct: 1864 WIELEPLQFWCSLLFMDQ 1881