Miyakogusa Predicted Gene

Lj3g3v2995970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2995970.1 tr|G7JKW4|G7JKW4_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_4g054980 PE=3 SV=1,84.29,0,seg,NULL; DNA/RNA
polymerases,NULL; Ribonuclease H-like,Ribonuclease H-like domain; DNA
polymerase t,CUFF.45134.1
         (2209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g054980.1 | DNA polymerase epsilon catalytic subunit A | H...  4007   0.0  

>Medtr4g054980.1 | DNA polymerase epsilon catalytic subunit A | HC |
            chr4:19992779-19966992 | 20130731
          Length = 2203

 Score = 4007 bits (10392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1905/2198 (86%), Positives = 2038/2198 (92%), Gaps = 13/2198 (0%)

Query: 16   SKKQKLIRNAEEELEAKLGFDVFSEGKKRLGWLLTFASSSWEDNDTNKVFSCVDLYFVTQ 75
            SKKQKL+ +AEEELEAKLGFD+FSEG+KRLGWLLTF+SSS+ED DT KV+SC+DLYFV Q
Sbjct: 13   SKKQKLLNSAEEELEAKLGFDLFSEGEKRLGWLLTFSSSSYEDEDTGKVYSCIDLYFVKQ 72

Query: 76   DGSTFKSKYRFRPYFYAATKDKMEMDVDAYLRRRYEGQIADIEIMEKEDLDLKNHLSGLR 135
            DGS+FK+KYRFRPYFY ATK+KMEMDVDAYLRRRYE QIADI+I+EKEDLDLKNHLSGLR
Sbjct: 73   DGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLR 132

Query: 136  KSYLKLSFDTVQQLMNVKRDLMHVVERNQAKSDAAEAYESILTGRRRDEKPQDFLDCIVD 195
            KSYL+LSFDTVQQLMNVK DLM VVERN+AKSDAAEAYESILTGRR ++K QDFLDCI+D
Sbjct: 133  KSYLRLSFDTVQQLMNVKSDLMQVVERNKAKSDAAEAYESILTGRR-EQKLQDFLDCIID 191

Query: 196  LREYDVPYHVRFAIDKDIRCGQWYDVGVSNNEVTLEKRTDLLQRAEVRICAFDIETTKLP 255
            LREYDVPYHVRFAID DIRCGQWYDVGVSN+ VTLE+RTDLLQRAEVR+CAFDIETTKLP
Sbjct: 192  LREYDVPYHVRFAIDNDIRCGQWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLP 251

Query: 256  LKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGYFKVTNVLNEIE 315
            LKFPDADYD VMMISYMVD QGYLI NRECVGDDIEDLE+TPKPEFEG+FKVTNV NEIE
Sbjct: 252  LKFPDADYDSVMMISYMVDRQGYLITNRECVGDDIEDLEFTPKPEFEGFFKVTNVQNEIE 311

Query: 316  LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDTNQGECRAKF 375
            LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHG KMSDELGFQCD NQGECRAKF
Sbjct: 312  LLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKF 371

Query: 376  ACHLDCYAWVKRDSYLPQGSQNLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQTMASYSVS 435
            A HLDC+AWVKRDSYLPQGSQ LKAVTKAKLGYDP EVNPEDMVRFAKEKPQ MASYSVS
Sbjct: 372  APHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPKEVNPEDMVRFAKEKPQMMASYSVS 431

Query: 436  DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKANVICPNKHQ 495
            DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQ++KANVICPNKHQ
Sbjct: 432  DAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQ 491

Query: 496  SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTVEPSAYEQLINNLERDLRYAI 555
            SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFT+EPSA+EQLI+NL+RDL+YAI
Sbjct: 492  SDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLISNLDRDLQYAI 551

Query: 556  EVEGKMDLKSVSNYEEVKNAIREKLLQLRDTPIREECPLIYHLDVAAMYPNIILTNRLQP 615
             VEGKMDL+SVSNY+EVKNAI EKL+ LRD PIR++CPLIYHLDVAAMYPNIILTNRLQP
Sbjct: 552  RVEGKMDLESVSNYDEVKNAIMEKLVNLRDAPIRDDCPLIYHLDVAAMYPNIILTNRLQP 611

Query: 616  PSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFTYGTDGRS 675
            PSIVTDEICTACDFNRPGKTCLRKLEWVWRG TF AKKSDYYHLKKQIESEF  G + RS
Sbjct: 612  PSIVTDEICTACDFNRPGKTCLRKLEWVWRGATFAAKKSDYYHLKKQIESEFVDGVNERS 671

Query: 676  SKSFLDLPKLEQQSKLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR 735
            SKSFLDLPK EQQ +LKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR
Sbjct: 672  SKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFR 731

Query: 736  DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK 795
            DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK
Sbjct: 732  DRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK 791

Query: 796  GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTED 855
            GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKT D
Sbjct: 792  GARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTVD 851

Query: 856  SKRKLTISYPCVMLNVDVAKNNTNDQYQTLTDPIRKSYKTHSECSIEFEVDGPYKAMIIP 915
            SKRKLTISYPCVMLNVDVA NNTNDQYQTLTDP RK+Y THSECSIEFEVDGPYKAMIIP
Sbjct: 852  SKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIP 911

Query: 916  ASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECY 975
            ASKEEGILIKKRYAVFNDDG+LAELKGFEIKRRGELKLIKVFQA+LF+KFLHGSTL+ECY
Sbjct: 912  ASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQADLFEKFLHGSTLKECY 971

Query: 976  SVVASVANRWLDLLDNQGMDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADF 1035
            S VA  ANRWLDLLDNQG DIADSELLDYISESSTMSKSLADYG+QKSCAVTTA+RLADF
Sbjct: 972  SEVAKEANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADF 1031

Query: 1036 LGDTMVRDKGLKCQYIVASEPQGAPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDAGIR 1095
            LGDTMV+DKGL+CQYIVASEP+G PVSERAVPVAIFETDA++MKFYVRKWCKVSSD GIR
Sbjct: 1032 LGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDADIMKFYVRKWCKVSSDVGIR 1091

Query: 1096 SIIDWSYYKQRLSSTIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKDDKFRQRKLDD 1155
            SIIDWSYYKQRLSS+IQKIITIPAAMQKVANPVPRV HPDWLHKKVREK+DKFRQRK+DD
Sbjct: 1092 SIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDD 1151

Query: 1156 MFNSMNRKESSKKHDDSNGVRLVMDDETVNDLEDFGSNGRSSTGRPRPIIRHYETNNERH 1215
             F SMN+ E SKKH+DS+GV LVM D+TVND+EDFG+ GRSST  PRPIIRHYE NNE+H
Sbjct: 1152 TFKSMNKNEHSKKHNDSSGVNLVMVDDTVNDMEDFGNKGRSSTLGPRPIIRHYEANNEQH 1211

Query: 1216 SVNRNGQEDSEQQCNDSSSIDRPPSLSQKDEISGENIDKNVDYQGWLQLKKRKWKDMLEK 1275
            S   NGQEDSEQQ  DSS+ID      Q++E S EN+D+ VDYQGWLQLKKRKWK ML K
Sbjct: 1212 SEKFNGQEDSEQQHIDSSNID------QQNETSCENVDRTVDYQGWLQLKKRKWKSMLGK 1265

Query: 1276 RKKRRLDNSEKSDRLNGILGQINGKIDQGRSNVSSYFKRHEVVLTRCHWQIIQLIHSPQI 1335
            RKK+RL+NS+KSD LNG L Q N K++ GRSNVSSYF+RHEVVLTR HWQIIQL+HSPQ+
Sbjct: 1266 RKKQRLENSKKSDHLNGSLEQTNSKMNHGRSNVSSYFRRHEVVLTRGHWQIIQLVHSPQV 1325

Query: 1336 GQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPISDEFLGKRVNKTLPHGRQSNNLYEVTIN 1395
            GQFFAWVVVDGIMLKIP+S+PRVFYLNSRSP ++EF GKRVNKTLPHGR S NLYEVTIN
Sbjct: 1326 GQFFAWVVVDGIMLKIPISIPRVFYLNSRSP-TEEFSGKRVNKTLPHGRHSYNLYEVTIN 1384

Query: 1396 EVQFREASKKLEALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKRRNLQEPWNVS 1455
            EVQ++E SKKL ALLADPD+EG+YETKVPLEFNAIVQLGCVCKVDK+AK+R+LQEPWN++
Sbjct: 1385 EVQYKEESKKLAALLADPDIEGVYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLN 1444

Query: 1456 ELHMKTTTECGYFEQSISFFYLYHSISEGRAIYVGYFPVSKAVTVVVVNPYQNKDLSPIF 1515
            ELHMKTTTEC Y EQSIS FYLYHSISEGRAIY GYFP S+A+T VVVNPYQN+DLSP +
Sbjct: 1445 ELHMKTTTECAYLEQSISLFYLYHSISEGRAIYAGYFPGSQAITFVVVNPYQNQDLSPAY 1504

Query: 1516 LERQYHSACQALSIESPPRNDIHFKVDYVAQVKDAETAMQRTINDHRSEHHGPMVAVIEC 1575
            L+RQ+  AC+ LSIE+PPRN I+FKV+YVA VKDAET MQ  IND RSE HGPMVAVIEC
Sbjct: 1505 LDRQFRDACRTLSIEAPPRNGINFKVEYVALVKDAETIMQSAINDLRSE-HGPMVAVIEC 1563

Query: 1576 PNVQLVKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIAL 1635
            P+VQL+KLGIRALDDFPCLSIP NARDSQY ILGWQQ+AAK+GMQRCAASVQWLNE+IAL
Sbjct: 1564 PDVQLLKLGIRALDDFPCLSIPFNARDSQYPILGWQQMAAKLGMQRCAASVQWLNEKIAL 1623

Query: 1636 SRYAHVPVGNFELDWLIFTADTFFSRALRDNQQVLWISDDGLPDLGGITGEENCFIDEVH 1695
            SRYAHVP+GN E DWL+FT DTFF RALRDNQQVLWISDDG PDLGG  GEENCF+DEV 
Sbjct: 1624 SRYAHVPLGNMEFDWLMFTVDTFFCRALRDNQQVLWISDDGFPDLGGNIGEENCFLDEVR 1683

Query: 1696 QPVLTYPGAYRKVTVELKLHHLAVDALLKCNQVNEMEGGALLGFDHEFDSEAFSVDGQNS 1755
            QPV T+PGAYRK++VELK+HHLAVDALLKCNQVNEMEGGALLGF HEFDSEAF V+GQN 
Sbjct: 1684 QPVCTFPGAYRKISVELKIHHLAVDALLKCNQVNEMEGGALLGFGHEFDSEAFQVNGQNG 1743

Query: 1756 FDESTSCAHAFRVLKQLIQRCLADAVTSGNVFADAMLQHLYRWLCSPQSKLHDPALHRLL 1815
            F+ESTSC HAFRVLK LIQRCLADAVTSGNVFADA+LQHLYRWLCSPQSK HDPALH+LL
Sbjct: 1744 FEESTSCTHAFRVLKHLIQRCLADAVTSGNVFADAILQHLYRWLCSPQSKFHDPALHQLL 1803

Query: 1816 HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCHSLLRTVQSRDLFE 1875
            HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYD STAKAYC SLLRT+QSRDLFE
Sbjct: 1804 HKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDFSTAKAYCDSLLRTIQSRDLFE 1863

Query: 1876 WIELEPLQFWLSLLFMDQYNYGGIPAKSDEAINDESQVDIISSWNIAEYLPKKVQDHFIF 1935
            WIELEPLQFW SLLFMDQYNYGGIPAKSDEA+NDESQVDIISSWNIAEYLPKK+QDH++F
Sbjct: 1864 WIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHYVF 1923

Query: 1936 IVSQFMYIPWNYAQKQAAIRASLQNDDSCTPSINIGAAEAVESEITEYIKGQISSYFTDK 1995
            IVSQFMYIPWNY +KQAAIRAS+QN DSCTPSINIGAAEA ESEITEYIK QISSYFTDK
Sbjct: 1924 IVSQFMYIPWNYTRKQAAIRASVQNGDSCTPSINIGAAEAFESEITEYIKEQISSYFTDK 1983

Query: 1996 LLGVVRD----MKRMTXXXXXXXXXXVLPQPTGDLHRGDAALEFIKHVCAVLALDHSVQH 2051
            LLGVVRD    MK M            L Q T DLHRGDAALEFIKHVCAVLALD SVQH
Sbjct: 1984 LLGVVRDIVLHMKGMGRSESDQSTSSGLHQLTDDLHRGDAALEFIKHVCAVLALDQSVQH 2043

Query: 2052 DILVMRKNLLKYVKVREFAPEAEFRDPCHSFILSNVICSYCNDCRDMDLCRDSALMTEEW 2111
            D+ VMRKNLLKYV+VREFAPEAEF DPCHSFIL NVICSYCN+CRD+DLCRD  L+ EEW
Sbjct: 2044 DVHVMRKNLLKYVRVREFAPEAEFHDPCHSFILPNVICSYCNECRDLDLCRDPTLLNEEW 2103

Query: 2112 RCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCSQVKAAHLAEQCACAGSFR 2171
             CAVPQCGQPYDREVMENALLQI RQRER YHLQDLVC+RC+QVKAAHLAEQCACAGSF+
Sbjct: 2104 HCAVPQCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFK 2163

Query: 2172 CKEDVSEFRTKMQVFLSIASRQKFQLLQECTSWILELR 2209
            CKED +EF  KM+V  +IASRQKFQLLQECT+W+LEL+
Sbjct: 2164 CKEDATEFCKKMRVIYNIASRQKFQLLQECTAWMLELK 2201