Miyakogusa Predicted Gene

Lj3g3v2995620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2995620.1 Non Characterized Hit- tr|I3SQX6|I3SQX6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,64.86,2e-17,seg,NULL,CUFF.45099.1
         (282 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g055130.1 | transmembrane protein, putative | HC | chr4:20...    93   3e-19
Medtr4g053310.1 | transmembrane protein, putative | LC | chr4:19...    54   1e-07

>Medtr4g055130.1 | transmembrane protein, putative | HC |
           chr4:20053603-20055293 | 20130731
          Length = 127

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 4/74 (5%)

Query: 212 MRITFDIP--ASDICKGCENSNGSCGAGLKCLCHPKECTDKVISKTGSIKLTGGVFYSLL 269
           +RIT ++P  A + CKGCEN NG+C AGLKCLCHPKEC DKVISK GSI  TG +F+SLL
Sbjct: 55  LRITVNVPTHAPEFCKGCENPNGNCNAGLKCLCHPKECKDKVISKVGSINSTGSLFFSLL 114

Query: 270 FSFIGSAA-LFMHV 282
            SFI + A L M+V
Sbjct: 115 -SFICTVAFLIMYV 127



 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 1  MNMNLFKKLNFLQSSLIFNVILVSSTPHHNQTNYCENIRTQQTPF 45
          MNM   KKL+ +Q  L+FN+IL SSTPHHN TN CENI+TQ  PF
Sbjct: 1  MNMKPLKKLHLIQFLLLFNLILGSSTPHHNHTNNCENIKTQP-PF 44


>Medtr4g053310.1 | transmembrane protein, putative | LC |
           chr4:19250295-19249802 | 20130731
          Length = 130

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 2/42 (4%)

Query: 212 MRITFDIP--ASDICKGCENSNGSCGAGLKCLCHPKECTDKV 251
           +RIT ++P    + C+GCEN NG+C AGLKCLCH KEC   +
Sbjct: 52  IRITVNVPTHVPEFCEGCENPNGNCNAGLKCLCHLKECNGHL 93