Miyakogusa Predicted Gene
- Lj3g3v2990310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2990310.1 tr|B9HPW4|B9HPW4_POPTR NAC domain protein,
IPR003441 OS=Populus trichocarpa GN=NAC113 PE=4 SV=1,65.28,2e-19,NAC
domain,No apical meristem (NAM) protein; FAMILY NOT NAMED,NULL; NAM,No
apical meristem (NAM) pro,CUFF.45078.1
(94 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g052620.1 | NAC transcription factor-like protein | HC | c... 125 7e-30
Medtr2g086690.1 | NAC transcription factor-like protein | HC | c... 102 6e-23
Medtr7g105170.1 | NAC transcription factor-like protein | HC | c... 85 1e-17
Medtr2g079990.1 | NAC transcription factor-like protein | HC | c... 47 3e-06
Medtr8g094580.1 | NAC-like transcription factor | HC | chr8:3949... 47 5e-06
Medtr8g094580.2 | NAC-like transcription factor | HC | chr8:3949... 46 9e-06
Medtr3g088110.1 | NAC-like transcription factor | HC | chr3:3995... 46 1e-05
Medtr3g088110.2 | NAC-like transcription factor | HC | chr3:3995... 46 1e-05
>Medtr4g052620.1 | NAC transcription factor-like protein | HC |
chr4:19088028-19085634 | 20130731
Length = 261
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 69/74 (93%), Gaps = 1/74 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFYKGKAPSGRKTKWKMNEYRAIQVSN QS+TATPQLRREFSLCR+YVISGSFR+FDRR
Sbjct: 114 MVFYKGKAPSGRKTKWKMNEYRAIQVSN-QSNTATPQLRREFSLCRIYVISGSFRAFDRR 172
Query: 61 PLKNERVESRLVHD 74
PL+ ERV+ V++
Sbjct: 173 PLERERVDQLPVNE 186
>Medtr2g086690.1 | NAC transcription factor-like protein | HC |
chr2:36452124-36453846 | 20130731
Length = 249
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFY GKAPSGRKTKWKM+EY+AIQ S+ QS+T P+LR EFSLCRVYVISGSF SFDRR
Sbjct: 114 MVFYIGKAPSGRKTKWKMHEYKAIQQSD-QSNTNPPKLRHEFSLCRVYVISGSFSSFDRR 172
Query: 61 PLKNERVESRLVH 73
PL ER + L H
Sbjct: 173 PL--ERPMTELQH 183
>Medtr7g105170.1 | NAC transcription factor-like protein | HC |
chr7:42639031-42640463 | 20130731
Length = 257
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSST-ATPQLRREFSLCRVYVISGSFRSFDR 59
MVFY G+AP+G+KT WKMNEY+AIQ+ SS A P+LR+EFSLCRVY S R+FDR
Sbjct: 114 MVFYSGRAPNGKKTDWKMNEYKAIQIDEASSSNKAAPKLRQEFSLCRVYKKSKCLRAFDR 173
Query: 60 RP 61
RP
Sbjct: 174 RP 175
>Medtr2g079990.1 | NAC transcription factor-like protein | HC |
chr2:33727407-33729223 | 20130731
Length = 354
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
+VFY GKAP G KT W M+EYR + S N T ++ LCR+Y + S ++
Sbjct: 119 LVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKL----DDWVLCRIYKKNSS----AQK 170
Query: 61 PLKNERVESR 70
P+ N + SR
Sbjct: 171 PIPNGVISSR 180
>Medtr8g094580.1 | NAC-like transcription factor | HC |
chr8:39492258-39494179 | 20130731
Length = 285
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSF-DR 59
+VFY GKAP G KT W M+EYR V + S ++ LCR+Y G + D
Sbjct: 109 LVFYAGKAPKGIKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDT 168
Query: 60 RP 61
+P
Sbjct: 169 KP 170
>Medtr8g094580.2 | NAC-like transcription factor | HC |
chr8:39492258-39494139 | 20130731
Length = 231
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSF-DR 59
+VFY GKAP G KT W M+EYR V + S ++ LCR+Y G + D
Sbjct: 55 LVFYAGKAPKGIKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDT 114
Query: 60 RP 61
+P
Sbjct: 115 KP 116
>Medtr3g088110.1 | NAC-like transcription factor | HC |
chr3:39954022-39955471 | 20130731
Length = 288
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
+VFY GKAP G KT W M+EYR V + + +L ++ LCR+Y G+
Sbjct: 109 LVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRL-DDWVLCRIYNKKGTIEKQPSN 167
Query: 61 PLKNERVESRLVHD 74
+ N + E + D
Sbjct: 168 SVVNRKTEHSEIED 181
>Medtr3g088110.2 | NAC-like transcription factor | HC |
chr3:39954022-39955471 | 20130731
Length = 288
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
+VFY GKAP G KT W M+EYR V + + +L ++ LCR+Y G+
Sbjct: 109 LVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRL-DDWVLCRIYNKKGTIEKQPSN 167
Query: 61 PLKNERVESRLVHD 74
+ N + E + D
Sbjct: 168 SVVNRKTEHSEIED 181