Miyakogusa Predicted Gene
- Lj3g3v2987100.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2987100.2 Non Characterized Hit- tr|I1P100|I1P100_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.46,3e-18,F-box domain,F-box domain, cyclin-like; F-box,F-box
domain, cyclin-like; SUBFAMILY NOT NAMED,NULL; F,CUFF.45067.2
(194 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g052460.1 | F-box plant-like protein | HC | chr4:18994185-... 178 3e-45
Medtr2g086920.1 | F-box plant-like protein | HC | chr2:36515626-... 141 3e-34
Medtr1g058490.1 | F-box protein | HC | chr1:25782530-25783927 | ... 108 3e-24
Medtr8g021080.1 | F-box plant protein | LC | chr8:7500818-750002... 91 5e-19
Medtr3g466350.1 | F-box protein | LC | chr3:27257310-27258164 | ... 90 1e-18
Medtr3g466280.1 | F-box protein | LC | chr3:27240708-27241562 | ... 85 3e-17
Medtr3g466330.1 | F-box protein | LC | chr3:27253020-27253748 | ... 80 1e-15
Medtr3g466300.1 | F-box protein | LC | chr3:27246240-27247734 | ... 76 2e-14
Medtr7g105320.1 | F-box plant protein, putative | HC | chr7:4269... 74 8e-14
Medtr8g022730.1 | F-box plant-like protein | LC | chr8:8057206-8... 73 1e-13
Medtr8g021090.1 | F-box protein | LC | chr8:7502270-7501895 | 20... 63 2e-10
Medtr5g013660.1 | F-box protein | LC | chr5:4381920-4383246 | 20... 54 8e-08
Medtr5g013660.2 | F-box protein | LC | chr5:4381920-4383943 | 20... 54 8e-08
Medtr1g060460.1 | F-box plant protein, putative | LC | chr1:2630... 52 4e-07
>Medtr4g052460.1 | F-box plant-like protein | HC |
chr4:18994185-18992755 | 20130731
Length = 344
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 105/164 (64%)
Query: 31 VHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSHVIS 90
+H DI+ THILT LD C D DLW+KIC TWPSL TTSHVIS
Sbjct: 24 MHHDILHTHILTHLDAATLATTASTCSHLRHLCMDNDLWKKICTETWPSLLDSTTSHVIS 83
Query: 91 TFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHRTET 150
TFP GHRSIFSDAFP+LHH ISAVDI+Y G+P+FSRV RTET
Sbjct: 84 TFPNGHRSIFSDAFPTLHHFSSHSKSNHPPSPPPPEELISAVDIHYKGKPVFSRVQRTET 143
Query: 151 EKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRHLEESLRL 194
+KN FLTS L + LEPNE+VP PV+F K E+WM++LEE+L L
Sbjct: 144 KKNMFLTSSLYIGTLEPNELVPTPVKFVRKNEEWMKNLEENLSL 187
>Medtr2g086920.1 | F-box plant-like protein | HC |
chr2:36515626-36517634 | 20130731
Length = 321
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 28 ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
IT +HP I+ +HIL+RLDG C + LWQKI +TWPSL P+ +
Sbjct: 5 ITTIHPYILQSHILSRLDGTSLTSVSSTATHLHNLCTEHHLWQKIITSTWPSLNNPSATS 64
Query: 88 VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXX--XXXISAVDIYYNGEPMFSRV 145
+ISTFP+ HRSIFSD+FPS+H++ SAVD+YY G P+FS++
Sbjct: 65 LISTFPSSHRSIFSDSFPSIHYSSSSSDTSSSSSLALSAPKELFSAVDLYYKGRPVFSKL 124
Query: 146 HRTETEKNWFLTSPLCVEMLEPNEVVPAPVRF 177
RTET K WFL SPL +E+LEPNE++ ++F
Sbjct: 125 LRTETHKGWFLCSPLWIEILEPNEIIETNIKF 156
>Medtr1g058490.1 | F-box protein | HC | chr1:25782530-25783927 |
20130731
Length = 326
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 28 ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
I AVH DII THILTRLDG C +E LW +C +TWPS
Sbjct: 16 IAAVHSDIIQTHILTRLDGPALASAASTCSQFNSLCTNEHLWANMCHSTWPSTNTERVQQ 75
Query: 88 VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHR 147
VIS FP G RS F+D+F S H ISAVDI++ +FS+V
Sbjct: 76 VISNFPNGFRSFFADSFSSHHQRD-----MTLTNHDETLSLISAVDIFHREGLVFSKVVE 130
Query: 148 TETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRH-LEESLRL 194
TET WF SP V++L+ +V+ PV G H L E LRL
Sbjct: 131 TETVTGWFRCSPFRVDLLDTKDVIKYPV--VGDENNVTCHDLGEELRL 176
>Medtr8g021080.1 | F-box plant protein | LC | chr8:7500818-7500027 |
20130731
Length = 263
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXX-XXCADEDLWQKICAATWPSLTAP 83
++ + + PDII T+IL RLDG C +E+LW+ IC + WP L P
Sbjct: 1 MNNFSRLDPDIIQTYILPRLDGAALMALSCVCSDLRHLICNNEELWRNICTSMWPCLLHP 60
Query: 84 TTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGE--PM 141
T SH+I+TFP G+RS FSDAFPS+HH + I A+DI +GE P+
Sbjct: 61 TVSHIITTFPGGYRSFFSDAFPSIHHYN-----QSHCLYRPINKLIHAIDISLHGEPKPL 115
Query: 142 FSRVHRTETEKNWFLTSPLCVEMLEPNEV-VPAPVRFAGKYEKWMR--HLEESLRL 194
F+++ R + + + S + + + + + PV K E+W R +L E+LRL
Sbjct: 116 FTKI-RVQPMNKFTIYSNGKIFLRDYSSLETQIPV----KKERWDRTEYLHENLRL 166
>Medtr3g466350.1 | F-box protein | LC | chr3:27257310-27258164 |
20130731
Length = 284
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 24 RLSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXX-XXC-ADEDLWQKICAATWPSLT 81
R++ + + DII THIL RLDG C ++EDLW+ IC +TWPSL
Sbjct: 2 RMNIFSRLDTDIIHTHILPRLDGTTLTVLSSVCSELRHMICHSNEDLWRNICTSTWPSLL 61
Query: 82 A-PTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEP 140
P +VISTFP G+RS FSDAFPSL HNH I VD++ +G+P
Sbjct: 62 LDPIVHNVISTFPGGYRSFFSDAFPSL-HNH--KNNNSYRFYPPTTELIHVVDVFVHGKP 118
Query: 141 MFSRV 145
+FSRV
Sbjct: 119 LFSRV 123
>Medtr3g466280.1 | F-box protein | LC | chr3:27240708-27241562 |
20130731
Length = 260
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCA--DEDLWQKICAATWPSLTA 82
+S + + PDI+ THIL RLDG +EDLW+ IC + WPSL
Sbjct: 3 MSIFSRLDPDIMHTHILPRLDGTTLIVLFSVCSELRHMICHNNEDLWRNICTSKWPSLLK 62
Query: 83 -PTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPM 141
P +VISTFP G+RS FSDAFPSLHH I AVDIY +GE +
Sbjct: 63 DPIVHNVISTFPGGYRSFFSDAFPSLHH-----LNNSHCSYPLTIDLIHAVDIYIHGEYL 117
Query: 142 FSRV 145
S V
Sbjct: 118 TSSV 121
>Medtr3g466330.1 | F-box protein | LC | chr3:27253020-27253748 |
20130731
Length = 224
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXX-XXCADEDLWQKICAATWPSLTA- 82
+ ++ PDII HIL RLDG C +EDLW+ IC +TWPSL
Sbjct: 3 MGIFCSLDPDIIRAHILPRLDGTTLTILSCVSSELRHMICNNEDLWRNICTSTWPSLLLD 62
Query: 83 PTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMF 142
P ++VISTFP G+RS FS HHN+ I +DIY +GEP+
Sbjct: 63 PIANNVISTFPGGYRSFFSFN----HHNN------NSYSWYLFAELIHTIDIYLHGEPLL 112
Query: 143 SRV 145
SRV
Sbjct: 113 SRV 115
>Medtr3g466300.1 | F-box protein | LC | chr3:27246240-27247734 |
20130731
Length = 239
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXX-XXCADEDLWQKICAATWPSLTA- 82
++ + + PDII HIL RLDG C D+DLW+ IC +TWPSL
Sbjct: 3 MNIFSTLDPDIIGAHILPRLDGTTLTAFSSVSSELRHMICNDKDLWRNICTSTWPSLLLD 62
Query: 83 PTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMF 142
P ++VISTFP G+ S FS F ++N+ I A+DIY +GEP
Sbjct: 63 PIANNVISTFPGGYHSFFS--FYHRNNNY--------YSWCPSAELIYAIDIYLHGEPFL 112
Query: 143 SRV 145
SRV
Sbjct: 113 SRV 115
>Medtr7g105320.1 | F-box plant protein, putative | HC |
chr7:42690664-42689176 | 20130731
Length = 333
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 29 TAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSHV 88
+AV PDII THILT LDG + + LW IC +TWPS P V
Sbjct: 18 SAVPPDIIQTHILTYLDGSSLASAASTCSQLNTLSSHDHLWTNICHSTWPSTNTPRIRQV 77
Query: 89 ISTFPAGHRSIFSDAF-----PSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFS 143
ISTF RS FSD+F + HH+ +SAVD+++ + S
Sbjct: 78 ISTFSNTSRSFFSDSFSTVTAKTFHHHR-------RVNINTTPEFLSAVDLFHRRRMILS 130
Query: 144 RVHRTETEKNWFLTSPLCVEMLEPNEVVPAPVRF 177
RV TET WF SP V++L+P + V + +
Sbjct: 131 RVVETETVSGWFRYSPFRVDILDPKDSVETDMEY 164
>Medtr8g022730.1 | F-box plant-like protein | LC |
chr8:8057206-8058831 | 20130731
Length = 278
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 33 PDIILTHILTRLDGXXXXXXXXXXXXXX-XXCAD-EDLWQKICAATWPSLTAPTTSHVIS 90
PDIILTHIL RL G C D EDLW C +TWPSL +IS
Sbjct: 9 PDIILTHILPRLGGETLIMLSSVSSEFRHMICNDNEDLWWNTCTSTWPSLLCIPIQKIIS 68
Query: 91 TFPAGHRSIFSDAFPSLHH-NH 111
F +G+RS FSDAFP++HH NH
Sbjct: 69 KFFSGYRSFFSDAFPAIHHRNH 90
>Medtr8g021090.1 | F-box protein | LC | chr8:7502270-7501895 |
20130731
Length = 96
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 68 LWQKICAATWPSLTAPTTSHVISTFPAGHRSIFSDAFPSLHHN 110
LW+ IC + WPSL P + VISTFP G+ S FSDAFPSLHH+
Sbjct: 23 LWRNICTSKWPSLMDPIVNDVISTFPGGYSSFFSDAFPSLHHH 65
>Medtr5g013660.1 | F-box protein | LC | chr5:4381920-4383246 |
20130731
Length = 311
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXX-XXXXXXCADEDLWQKICAATWPSL--T 81
+++ + DI+ H+L RLDG +EDL +KIC +TWPSL
Sbjct: 1 MNYFDRLDEDIVPFHLLPRLDGETLIRLSCVSPEFRHLIINNEDLMRKICISTWPSLLYG 60
Query: 82 APTTSHVISTFPAGHRSIFSDAFPSLHHNH 111
+S FP+ +RS F AFPS+ +H
Sbjct: 61 DGIGCRKVSRFPSSYRSFFCQAFPSIDEHH 90
>Medtr5g013660.2 | F-box protein | LC | chr5:4381920-4383943 |
20130731
Length = 311
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 25 LSFITAVHPDIILTHILTRLDGXXXXXXXXXX-XXXXXXCADEDLWQKICAATWPSL--T 81
+++ + DI+ H+L RLDG +EDL +KIC +TWPSL
Sbjct: 1 MNYFDRLDEDIVPFHLLPRLDGETLIRLSCVSPEFRHLIINNEDLMRKICISTWPSLLYG 60
Query: 82 APTTSHVISTFPAGHRSIFSDAFPSLHHNH 111
+S FP+ +RS F AFPS+ +H
Sbjct: 61 DGIGCRKVSRFPSSYRSFFCQAFPSIDEHH 90
>Medtr1g060460.1 | F-box plant protein, putative | LC |
chr1:26309322-26310355 | 20130731
Length = 163
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 29 TAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSHV 88
+AVH DII HILTRLDG +++ CA PS PT
Sbjct: 43 SAVHDDIIQAHILTRLDGAALASAASTCSQLNSLSVPMNIYGPTCAT--PSSHPPT---- 96
Query: 89 ISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHRT 148
++TF + H+ + P ISAVDI++ +FS+V T
Sbjct: 97 LNTFSSHHQRDITLRNPD-----------------QTLSLISAVDIFHCKGLVFSKVVET 139
Query: 149 ETEKNWFLTSPLCVEMLEPNEVV 171
T WF SP V++L+ +++
Sbjct: 140 GTVTGWFRCSPFLVDLLDVGKIM 162