Miyakogusa Predicted Gene

Lj3g3v2986080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2986080.1 tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen
decarboxylase OS=Lotus japonicus PE=2 SV=1,96.98,0,UROPORPHYRINOGEN
DECARBOXYLASE,Uroporphyrinogen decarboxylase HemE;
METHYLTETRAHYDROFOLATE:HOMOCYSTE,CUFF.45129.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC | chr2:319...   323   8e-89
Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC | chr3:324...   178   3e-45

>Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC |
           chr2:31981646-31987745 | 20130731
          Length = 407

 Score =  323 bits (828), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 167/219 (76%), Positives = 180/219 (82%), Gaps = 7/219 (3%)

Query: 1   MATSINSCGLGWKSSSLFAHSTTTGFNSISPSFKPKP---KLSLTCXXXXXXX-DPLLVK 56
           + TSINS GLGWKSS LF  S    FN +S  FKPKP   K +LTC        DPLLVK
Sbjct: 4   IPTSINS-GLGWKSSPLFQQSNC--FNLLSSPFKPKPSLTKFTLTCSAASSSSSDPLLVK 60

Query: 57  AARGDPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG 116
           AARGDPVSRPPAWMMRQAGRYMA+YRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG
Sbjct: 61  AARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG 120

Query: 117 VIIFSDILTPLPAFGIEFDIEDVRGPVIQSPIRSEEGLKALHSIDLDRLRFVGDSLKLLR 176
           VIIFSDILTPLPAFGI+FDIEDVRGPVIQSPIRSEEGLK LH ID D+LRFVG+SLK+L+
Sbjct: 121 VIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLRFVGESLKILQ 180

Query: 177 QEVGGHAAVLGFVGAPWTLATYIEDSAFSFVTGDSRLQC 215
           QEVGG AAVLGFVGAPWTLATYI +   +    + +  C
Sbjct: 181 QEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTNIKSMC 219


>Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC |
           chr3:32489055-32484665 | 20130731
          Length = 389

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 125/203 (61%), Gaps = 14/203 (6%)

Query: 17  LFAHSTTTGFNSISPSFKPK-----PKLSLTCX--------XXXXXXDPLLVKAARGDPV 63
           +F    +T F SI P  +       P  S+ C               +PLL+ A RG  V
Sbjct: 1   MFCGVVSTSFTSILPRKQHHSTPFSPFKSIQCSLPGAVAEPKTNNATEPLLLNAVRGLDV 60

Query: 64  SRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDI 123
            RPP W+MRQAGRYM  Y+ + EK+PSFRERSE  DL+VEISLQPWK F+PDGVI+FSDI
Sbjct: 61  ERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDI 120

Query: 124 LTPLPAFGIEFDIEDVRGPVIQSPIRSEEGLKALHS-IDLDRLRFVGDSLKLLRQEVGGH 182
           LTPL    I FDI   +GPVI  P+ S   +  +   I  + + +VG++L +LR+EV   
Sbjct: 121 LTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNK 180

Query: 183 AAVLGFVGAPWTLATYIEDSAFS 205
           +AVLGFVGAP+TLA+Y+ +   S
Sbjct: 181 SAVLGFVGAPFTLASYVVEGGSS 203