Miyakogusa Predicted Gene

Lj3g3v2970750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2970750.1 tr|Q9FMS3|Q9FMS3_ARATH At5g22280 OS=Arabidopsis
thaliana GN=At5g22280/MWD9.6 PE=4 SV=1,52.04,2e-19,coiled-coil,NULL;
seg,NULL,CUFF.45037.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g086880.1 | NAC transcription factor-like protein | HC | c...   113   5e-26
Medtr4g052250.1 | hypothetical protein | HC | chr4:18908206-1890...    62   1e-10

>Medtr2g086880.1 | NAC transcription factor-like protein | HC |
           chr2:36530061-36538039 | 20130731
          Length = 589

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 70/100 (70%)

Query: 1   MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSISKKHHRGSKEVESVKEKIILVQEQ 60
           MSR M           TSQFEWKQ L  D +SNSS+++K HR S   E+VKEKIILVQE+
Sbjct: 482 MSRPMLLVFLLIILIITSQFEWKQPLVSDVESNSSVTQKQHRISNAEETVKEKIILVQEK 541

Query: 61  NIRRLSELVRHLQEQLKLCRSNNGTKNGTESPKAERVFDL 100
           NIRRL+ELVRHLQEQL+ C+ +NGT N T  P  ER+ +L
Sbjct: 542 NIRRLNELVRHLQEQLQQCKGSNGTINSTVGPLTERILEL 581


>Medtr4g052250.1 | hypothetical protein | HC |
          chr4:18908206-18906444 | 20130731
          Length = 106

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 52 EKIILVQEQNIRRLSELVRHLQEQLKLCRSNNGTKNGTES 91
          E IILVQE+NIRRL+E+VRHLQ+QL+ CRS+N T+NGT S
Sbjct: 14 ESIILVQEKNIRRLNEVVRHLQQQLQQCRSSNDTRNGTVS 53