Miyakogusa Predicted Gene

Lj3g3v2949670.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2949670.2 tr|G7JH96|G7JH96_MEDTR Transcription factor E2F
OS=Medicago truncatula GN=MTR_4g052000 PE=3 SV=1,79.53,0,E2F-DP
heterodimerization region,NULL; "Winged helix" DNA-binding
domain,NULL; seg,NULL; no descript,CUFF.45032.2
         (293 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g052000.1 | E2F transcription factor | HC | chr4:18814210-...   439   e-123
Medtr1g105110.1 | E2F transcription factor | HC | chr1:25000070-...   325   3e-89
Medtr3g113800.2 | E2F transcription factor | HC | chr3:53087590-...   190   1e-48
Medtr3g113800.1 | E2F transcription factor | HC | chr3:53087588-...   189   2e-48
Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | H...    66   3e-11
Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | H...    66   3e-11
Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | H...    66   3e-11
Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | H...    66   4e-11
Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | H...    66   4e-11
Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | H...    66   4e-11

>Medtr4g052000.1 | E2F transcription factor | HC |
           chr4:18814210-18820291 | 20130731
          Length = 460

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/298 (74%), Positives = 238/298 (79%), Gaps = 8/298 (2%)

Query: 1   MSGKRXXXXXXXXXXQIMHSMKRQLPFVAA-----ASGDYHRFTPDRRRNPDQVAEAIVV 55
           MSG R          QIM   +RQLPF +      A+ DYHRF PD RRN D   EAIVV
Sbjct: 1   MSGTRTPPATAAPD-QIMQ--QRQLPFSSMKPPFLAAADYHRFAPDHRRNQDLETEAIVV 57

Query: 56  KTPQLKRKNEAADFEADSGDRMNPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQ 115
           KTPQLKRK+EAADFEADSGDRM PGST  A S  QTP+           R+TKC +S TQ
Sbjct: 58  KTPQLKRKSEAADFEADSGDRMTPGSTAAANSSVQTPVSGKAGKGGKSSRMTKCNRSGTQ 117

Query: 116 TPGPNIGSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRR 175
           TPG NIGSPS NNLTPAG CRYDSSLGLLTKKFI LIKQAEDG+LDLN AA+TLEVQKRR
Sbjct: 118 TPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFIALIKQAEDGILDLNNAADTLEVQKRR 177

Query: 176 IYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQI 235
           IYDITNV EGIGLIEKKLKNRIQWKGLDVS+PG+ DDSF SLQ E+ENLTIEER+LDEQI
Sbjct: 178 IYDITNVFEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTIEERRLDEQI 237

Query: 236 REMQERLRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEVI 293
           REMQERLR+LSEDENNEK LFVTEEDIK LP FQNETLIAIKAPHGTTLEVPDPDE +
Sbjct: 238 REMQERLRNLSEDENNEKFLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAV 295


>Medtr1g105110.1 | E2F transcription factor | HC |
           chr1:25000070-24993884 | 20130731
          Length = 463

 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/284 (61%), Positives = 206/284 (72%), Gaps = 9/284 (3%)

Query: 16  QIMHSMKRQLPFVA-----AASGDYHRFTP-DRRRNPDQVAEAIVVKTPQLKRKNEAADF 69
           QI   +KR L FV+     A + +YH F   D R+  D V EA++V++P +KRKN   + 
Sbjct: 19  QIRPPLKRHLAFVSTKPPFAPTDEYHTFAAVDSRKVADHVNEAVIVRSPVIKRKNGMNES 78

Query: 70  EADSGDRMNPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQTPGPNIGSPSANNL 129
           E DS    N        SPF+TPL           R +K  KS   TP  N GSPS   L
Sbjct: 79  EGDSQKSSNSPGYNAMNSPFKTPLSAKGGRANKS-RASKEGKSCPPTPISNAGSPSP--L 135

Query: 130 TPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLI 189
           TPAGSCRYDSSLGLLTKKFI+L+K+AEDG+LDLNKAAETL+VQKRRIYDITNVLEGIGLI
Sbjct: 136 TPAGSCRYDSSLGLLTKKFIHLLKRAEDGILDLNKAAETLQVQKRRIYDITNVLEGIGLI 195

Query: 190 EKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQERLRDLSEDE 249
           EK +KNRI WKG++ S PG  D     L++EV+NL++EE++LD+QIREMQERLR LSEDE
Sbjct: 196 EKNIKNRIYWKGIESSTPGNVDGDISLLKSEVDNLSLEEQRLDDQIREMQERLRGLSEDE 255

Query: 250 NNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEVI 293
           NN+K LFVTEEDIK LP FQNETLIAIKAPHGTTLEVPDP+E +
Sbjct: 256 NNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAV 299


>Medtr3g113800.2 | E2F transcription factor | HC |
           chr3:53087590-53083246 | 20130731
          Length = 309

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 122/167 (73%)

Query: 125 SANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLE 184
           + ++L  A   RYDSSLGLLTKKFI+LI +A+DG LDLNK AE L+VQKRRIYDITNVLE
Sbjct: 91  NTDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLE 150

Query: 185 GIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQERLRD 244
           GIGLIEK  KN I+WKG D   P + +    +L+ EV++L  EE +LD+ I E +E +R+
Sbjct: 151 GIGLIEKTSKNHIRWKGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRN 210

Query: 245 LSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDE 291
           L E EN  K LF T+EDI  LP FQN+ LI IKAP  + +EVPDPDE
Sbjct: 211 LEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDE 257


>Medtr3g113800.1 | E2F transcription factor | HC |
           chr3:53087588-53083226 | 20130731
          Length = 363

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 122/167 (73%)

Query: 125 SANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLE 184
           + ++L  A   RYDSSLGLLTKKFI+LI +A+DG LDLNK AE L+VQKRRIYDITNVLE
Sbjct: 91  NTDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLE 150

Query: 185 GIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQERLRD 244
           GIGLIEK  KN I+WKG D   P + +    +L+ EV++L  EE +LD+ I E +E +R+
Sbjct: 151 GIGLIEKTSKNHIRWKGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRN 210

Query: 245 LSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDE 291
           L E EN  K LF T+EDI  LP FQN+ LI IKAP  + +EVPDPDE
Sbjct: 211 LEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDE 257


>Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194343-44190467 | 20130731
          Length = 358

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83


>Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194355-44190467 | 20130731
          Length = 358

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83


>Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194065-44191173 | 20130731
          Length = 364

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83


>Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 345

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83


>Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 339

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83


>Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194429-44190467 | 20130731
          Length = 385

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
           R   SLGLL   F++L  + +  ++ L+ AA  L V++RRIYDI NVLE IG++ +K KN
Sbjct: 17  RKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKN 76

Query: 196 RIQWKGL 202
           +  WKG 
Sbjct: 77  QYTWKGF 83