Miyakogusa Predicted Gene

Lj3g3v2949660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2949660.1 tr|G7JH90|G7JH90_MEDTR 5'-3' exoribonuclease
OS=Medicago truncatula GN=MTR_4g051920 PE=4 SV=1,57.54,0,5'->3'
EXORIBONUCLEASE,NULL,CUFF.45031.1
         (431 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g051920.1 | 5'-3' exoribonuclease | HC | chr4:18782027-187...   465   e-131
Medtr7g114570.1 | 5'-3' exoribonuclease | HC | chr7:47305879-473...   214   2e-55
Medtr7g114570.2 | 5'-3' exoribonuclease | HC | chr7:47305880-473...   213   4e-55

>Medtr4g051920.1 | 5'-3' exoribonuclease | HC |
           chr4:18782027-18788114 | 20130731
          Length = 846

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/432 (57%), Positives = 304/432 (70%), Gaps = 52/432 (12%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +KDKGDLFKSG+F  DKIKLG  G+K+RYYKEKFSVEGS + E KRK++V+KYTEGLLWV
Sbjct: 432 IKDKGDLFKSGDFLTDKIKLGNVGFKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWV 491

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           LQYYFSGVASW+WFYPYHYGPF SDLKGM QV+ NFEKGVPF PFDQLLSVLP +SAYAL
Sbjct: 492 LQYYFSGVASWTWFYPYHYGPFVSDLKGMAQVRVNFEKGVPFLPFDQLLSVLPQKSAYAL 551

Query: 121 PKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLS 180
           PK+Y++LM+DE SKI   Y QDFE+D EGKR+MWQ +CKLP+++E+ LL+ETRE++N LS
Sbjct: 552 PKAYAQLMLDEQSKIFDLYSQDFEIDIEGKRFMWQGVCKLPYMDEKRLLTETRELKNELS 611

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQSKLETNI-SDRIGGIISLCLEDVDV 239
           ++E  RNSV+VD L V  ++ L+ KICSL  +    KL+T+I SD IGGIISLC E V+ 
Sbjct: 612 ESEAKRNSVEVDRLLVSGTTKLAEKICSLKLN----KLDTSISSDGIGGIISLCHECVE- 666

Query: 240 ERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKETVLWH 299
                     + K ED   CV YE P GG+S  + HLL GVN+P KTI+E++I ETVLWH
Sbjct: 667 ----------NNKHEDIVFCVKYEHPVGGTS-HVQHLLCGVNLPEKTIFENDINETVLWH 715

Query: 300 EKQMYQTHNRFERSIASSN---------------ATTPQNRRSFSLNAPPEVIYKGAGVG 344
           ++   Q ++ F R+    N                +T    RSFS NAPPE I+KGAGVG
Sbjct: 716 DQS--QQYSCFGRANNQDNWRNSNKEGNVSKFHPNSTSFGGRSFSRNAPPESIHKGAGVG 773

Query: 345 WGSGRGKPSNTPTMQRLNTMT-NERVSPSLSPNH---------HHQSLQSQTMPFGRGRG 394
           WGSGRGK       +R++  T NER+S S SP H         +HQ  +S  +PFGRGRG
Sbjct: 774 WGSGRGKS------ERIDHETINERMS-SFSPFHKQPNDHGGSYHQHQRSH-VPFGRGRG 825

Query: 395 RLGPNANNVNPW 406
           R   N NNV  W
Sbjct: 826 RTSQNPNNVYAW 837


>Medtr7g114570.1 | 5'-3' exoribonuclease | HC |
           chr7:47305879-47315956 | 20130731
          Length = 956

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 178/324 (54%), Gaps = 25/324 (7%)

Query: 15  IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWF 74
           +DK+KLG  GY +RYY EKF      + E+ +KD+V KY EGL WV +YY+ GV SW W+
Sbjct: 438 VDKVKLGQPGYTERYYAEKFGASDP-EIERIKKDIVLKYVEGLCWVCRYYYQGVCSWQWY 496

Query: 75  YPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSK 134
           YPYHY PFASDLK +  ++  F  G PF PFDQL+  LP  S+ ALP+ Y  LMI+  S 
Sbjct: 497 YPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSSSSALPERYRDLMINPSSP 556

Query: 135 ILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSL 194
           IL +YP DFE+D  GK+Y WQ + KLP+I+E++LLS TR ++  L++ E++RNS  +D L
Sbjct: 557 ILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLEGTLTEEEQLRNSKMLDLL 616

Query: 195 FVRSSSNLSTKIC----SLSTDNNQSK----LETNISDRIGGIISLCLEDV---DVERPN 243
           +V  +  L   I     + S   +Q +    ++ + SD + G +     +V    V  P 
Sbjct: 617 YVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNGFLWSYERNVFRTVVSSPI 676

Query: 244 LGMEICDKKQEDHALCVYYELPAGGSSTTMHHL---LSGVNIPTKTIYESEIKET-VLWH 299
            G++     Q    L + Y  P      T  H+     GV +P K +   +IK   VLWH
Sbjct: 677 KGLQDIACNQ---VLNITYLNP-----RTHRHIPKPPDGVVMPQKILRALDIKPLPVLWH 728

Query: 300 EKQMYQTHNRFERSIASSNATTPQ 323
           E    + H   ER         PQ
Sbjct: 729 EDNS-RRHQARERQQVPGAIAGPQ 751


>Medtr7g114570.2 | 5'-3' exoribonuclease | HC |
           chr7:47305880-47315956 | 20130731
          Length = 945

 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/318 (39%), Positives = 175/318 (55%), Gaps = 24/318 (7%)

Query: 15  IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWF 74
           +DK+KLG  GY +RYY EKF      + E+ +KD+V KY EGL WV +YY+ GV SW W+
Sbjct: 438 VDKVKLGQPGYTERYYAEKFGASDP-EIERIKKDIVLKYVEGLCWVCRYYYQGVCSWQWY 496

Query: 75  YPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSK 134
           YPYHY PFASDLK +  ++  F  G PF PFDQL+  LP  S+ ALP+ Y  LMI+  S 
Sbjct: 497 YPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSSSSALPERYRDLMINPSSP 556

Query: 135 ILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSL 194
           IL +YP DFE+D  GK+Y WQ + KLP+I+E++LLS TR ++  L++ E++RNS  +D L
Sbjct: 557 ILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLEGTLTEEEQLRNSKMLDLL 616

Query: 195 FVRSSSNLSTKIC----SLSTDNNQSK----LETNISDRIGGIISLCLEDVDVERPNLGM 246
           +V  +  L   I     + S   +Q +    ++ + SD + G   L   + +V R  +  
Sbjct: 617 YVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNGF--LWSYERNVFRTVVSS 674

Query: 247 EICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKET-VLWHEKQMYQ 305
            I  K  +D A      +P             GV +P K +   +IK   VLWHE    +
Sbjct: 675 PI--KGLQDIACNQVLHIPKPP---------DGVVMPQKILRALDIKPLPVLWHEDNS-R 722

Query: 306 THNRFERSIASSNATTPQ 323
            H   ER         PQ
Sbjct: 723 RHQARERQQVPGAIAGPQ 740