Miyakogusa Predicted Gene

Lj3g3v2926310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2926310.1 CUFF.45007.1
         (321 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g050180.1 | replication factor C1 | HC | chr4:17764475-177...   561   e-160
Medtr4g050180.2 | replication factor C1 | HC | chr4:17764874-177...   560   e-160
Medtr1g047790.1 | chromosome transmission fidelity protein | HC ...    64   2e-10

>Medtr4g050180.1 | replication factor C1 | HC |
           chr4:17764475-17754850 | 20130731
          Length = 988

 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/316 (87%), Positives = 297/316 (93%)

Query: 1   MDEVDGMSAGDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 60
           MDEVDGMSAGDRGGVADLIASIK+SK+PIICICNDRYSQKLKSL+NYCLLLS+RKPTKQQ
Sbjct: 507 MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLMNYCLLLSYRKPTKQQ 566

Query: 61  MAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLN 120
           MAK+ M+VAKAEGLQVNEIALEELAERVNGDMRMALNQL YM LSMSVINYDDIR+RLL 
Sbjct: 567 MAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLT 626

Query: 121 NAKDEDISPFTAVDKLFGFNAGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGEDD 180
           NAKDEDISPFTAVDKLFGFNAG+++MDERI+LSMSDPDLVPLLIQENYINYRPSSAG+DD
Sbjct: 627 NAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDD 686

Query: 181 SGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPAALLHGQRETLEQG 240
           +G+KRMNLIARAAESIA GDIV+VQIRRYRQWQLSQTSSVASCI+PA+LLHG RE LEQG
Sbjct: 687 NGLKRMNLIARAAESIATGDIVSVQIRRYRQWQLSQTSSVASCILPASLLHGSREILEQG 746

Query: 241 ERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLFLKQLVEPL 300
           ERNFNRFGGWLGKNSTMGKNMRL+DDLHVHILASRESSSGRDTIRLEYLT  LK L EPL
Sbjct: 747 ERNFNRFGGWLGKNSTMGKNMRLMDDLHVHILASRESSSGRDTIRLEYLTTLLKNLTEPL 806

Query: 301 RVLPKVGSSSITFNFL 316
           RVLPK  +      F+
Sbjct: 807 RVLPKAEAVEKVVEFM 822


>Medtr4g050180.2 | replication factor C1 | HC |
           chr4:17764874-17754850 | 20130731
          Length = 1016

 Score =  560 bits (1442), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/316 (87%), Positives = 297/316 (93%)

Query: 1   MDEVDGMSAGDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 60
           MDEVDGMSAGDRGGVADLIASIK+SK+PIICICNDRYSQKLKSL+NYCLLLS+RKPTKQQ
Sbjct: 536 MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLMNYCLLLSYRKPTKQQ 595

Query: 61  MAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLN 120
           MAK+ M+VAKAEGLQVNEIALEELAERVNGDMRMALNQL YM LSMSVINYDDIR+RLL 
Sbjct: 596 MAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLT 655

Query: 121 NAKDEDISPFTAVDKLFGFNAGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGEDD 180
           NAKDEDISPFTAVDKLFGFNAG+++MDERI+LSMSDPDLVPLLIQENYINYRPSSAG+DD
Sbjct: 656 NAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDD 715

Query: 181 SGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPAALLHGQRETLEQG 240
           +G+KRMNLIARAAESIA GDIV+VQIRRYRQWQLSQTSSVASCI+PA+LLHG RE LEQG
Sbjct: 716 NGLKRMNLIARAAESIATGDIVSVQIRRYRQWQLSQTSSVASCILPASLLHGSREILEQG 775

Query: 241 ERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLFLKQLVEPL 300
           ERNFNRFGGWLGKNSTMGKNMRL+DDLHVHILASRESSSGRDTIRLEYLT  LK L EPL
Sbjct: 776 ERNFNRFGGWLGKNSTMGKNMRLMDDLHVHILASRESSSGRDTIRLEYLTTLLKNLTEPL 835

Query: 301 RVLPKVGSSSITFNFL 316
           RVLPK  +      F+
Sbjct: 836 RVLPKAEAVEKVVEFM 851


>Medtr1g047790.1 | chromosome transmission fidelity protein | HC |
           chr1:18064972-18083135 | 20130731
          Length = 985

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%)

Query: 28  PIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAER 87
           P+ICICND Y+  L+SL     +  F +PT  ++  RL  +   EG++ N IAL  L + 
Sbjct: 474 PVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKANAIALSALVDY 533

Query: 88  VNGDMRMALNQLHYMSLSMSVINYDDI 114
              D+R  LN L ++S     +N  DI
Sbjct: 534 TACDIRSCLNTLQFLSKKKEALNAFDI 560