Miyakogusa Predicted Gene
- Lj3g3v2923210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2923210.1 Non Characterized Hit- tr|I1M451|I1M451_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,68.64,0,Ring
finger,Zinc finger, RING-type; no description,Zinc finger,
RING/FYVE/PHD-type; RING/U-box,NULL;,CUFF.44997.1
(220 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g049500.1 | RING/U-box helicase | HC | chr4:17406992-17415... 293 7e-80
Medtr2g012830.1 | SNF2, helicase and zinc finger protein | HC | ... 81 6e-16
Medtr1g115215.2 | chromatin remodeling protein | HC | chr1:51892... 79 2e-15
Medtr1g115215.1 | chromatin remodeling protein | HC | chr1:51892... 79 2e-15
Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314... 68 5e-12
Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405... 68 5e-12
Medtr1g044120.1 | DNA repair helicase rad5,16, putative | HC | c... 63 2e-10
>Medtr4g049500.1 | RING/U-box helicase | HC | chr4:17406992-17415500
| 20130731
Length = 935
Score = 293 bits (751), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/221 (66%), Positives = 176/221 (79%), Gaps = 3/221 (1%)
Query: 1 MLLVKHKILKNIMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNT 60
M+L+K+K+LK+I+LRRTKIGRAADLA P +I+S+RR LD+KEQDYY+S E NT
Sbjct: 568 MILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNT 627
Query: 61 YVEANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDGTVEQVCGICDE 120
YVE N + N+YA IF LLT+LRQAVDHPYLVVYS A + GG AS+G VEQ CGIC +
Sbjct: 628 YVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAARQGGNLASNGDVEQECGICHD 687
Query: 121 PVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITSSKD-VSGKSNDTAIKG 179
VEDPVVTSCEH FC CL+DFSAS+ + CPSCS +TV++TS+KD V K+ T IKG
Sbjct: 688 TVEDPVVTSCEHTFCKGCLIDFSASLGQISCPSCSKLLTVDLTSNKDAVVDKT--TTIKG 745
Query: 180 FRSSSILYKIELENFQTSTKIEALREEIYFMIQRDGSAKGI 220
FRSSSIL +I++ENFQTSTKIEALREEI FM++RDGSAK I
Sbjct: 746 FRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAI 786
>Medtr2g012830.1 | SNF2, helicase and zinc finger protein | HC |
chr2:3311076-3321817 | 20130731
Length = 1303
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 8 ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
+LK IMLRRTK G D ++ P K + +R+V +E+D+Y + Y +
Sbjct: 868 VLKTIMLRRTK-GTLLDGEPIISLPPKSVELRKVEFSQEERDFYSKLEADSRAQFQEYAD 926
Query: 64 ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDGTVEQ---------- 113
A V +Y +I +L +LRQA DHP LV L V + +
Sbjct: 927 AGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPREKQLFLLKCLE 986
Query: 114 ----VCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPS 153
+CGIC++ E+ VV+ C HVFCN C+ + D CP+
Sbjct: 987 ASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGED-NQCPA 1029
>Medtr1g115215.2 | chromatin remodeling protein | HC |
chr1:51892999-51882725 | 20130731
Length = 1040
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 8 ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
+L+ IMLRRTK G D + P K I++ +V +E+ +YK + Y
Sbjct: 612 VLRAIMLRRTK-GTLLDGKPIITLPPKTINLEKVDFSYEERAFYKKLEADSRSQFKAYAA 670
Query: 64 ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDG-------------- 109
A V +YA+I +L +LRQA DHP LV + + V +
Sbjct: 671 AGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLE 730
Query: 110 TVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPS 153
T +C +C++P +D V++ C HVFC C+ + S D +CP+
Sbjct: 731 TTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTS-DDNMCPA 773
>Medtr1g115215.1 | chromatin remodeling protein | HC |
chr1:51892999-51882725 | 20130731
Length = 1040
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 8 ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
+L+ IMLRRTK G D + P K I++ +V +E+ +YK + Y
Sbjct: 612 VLRAIMLRRTK-GTLLDGKPIITLPPKTINLEKVDFSYEERAFYKKLEADSRSQFKAYAA 670
Query: 64 ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDG-------------- 109
A V +YA+I +L +LRQA DHP LV + + V +
Sbjct: 671 AGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLE 730
Query: 110 TVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPS 153
T +C +C++P +D V++ C HVFC C+ + S D +CP+
Sbjct: 731 TTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTS-DDNMCPA 773
>Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314 |
20130731
Length = 1022
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 35/184 (19%)
Query: 6 HKILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTY 61
ILK IMLRRTK + L P + + E+D+Y++ + +
Sbjct: 643 QSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQF 702
Query: 62 VEANIVMNHYADIFGLLTKLRQAVDHPYLVVYSK-----------PEALKGGGVAASDGT 110
VE V+++YA I LL +LRQ DHP+LV+ + G AS+G
Sbjct: 703 VEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTCNASEGE 762
Query: 111 VEQV--------------------CGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVL 150
V+ C IC E ED V+T C H C CL+ + L
Sbjct: 763 VKDALSRAYVQEVVEELRKGEQGECPICLEAFEDSVLTPCAHRLCRECLLASWRNSTSGL 822
Query: 151 CPSC 154
CP C
Sbjct: 823 CPVC 826
>Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405 |
20130731
Length = 1025
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 35/184 (19%)
Query: 6 HKILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTY 61
ILK IMLRRTK + L P + + E+D+Y++ + +
Sbjct: 637 QSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQF 696
Query: 62 VEANIVMNHYADIFGLLTKLRQAVDHPYLVVYSK-----------PEALKGGGVAASDGT 110
VE V+++YA I LL +LRQ DHP+LV+ + G AS+G
Sbjct: 697 VEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTCNASEGE 756
Query: 111 VEQV--------------------CGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVL 150
V+ C IC E ED V+T C H C CL+ + L
Sbjct: 757 VKDALSRAYVQEVVEELRKGEQGECPICLEAFEDSVLTPCAHRLCRECLLASWRNSTSGL 816
Query: 151 CPSC 154
CP C
Sbjct: 817 CPVC 820
>Medtr1g044120.1 | DNA repair helicase rad5,16, putative | HC |
chr1:16509136-16515621 | 20130731
Length = 1153
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 60/207 (28%)
Query: 8 ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
IL+ +MLRRTK + + L P I + E+D+Y + + YV
Sbjct: 750 ILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRAKVQFEQYVA 809
Query: 64 ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSK---------------------------- 95
V+NHYA+I LL +LR+ +HP+LV+
Sbjct: 810 QGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDTAKYADLSRLARKFLESHTESSDMCCE 869
Query: 96 ---PEALKGGGVAA--------------SDGTVEQVCG-----------ICDEPVEDPVV 127
P+ + +A+ S G +++V G IC E +DPV
Sbjct: 870 SDAPQNAELNKLASNFLQNSASTSNPIQSRGYIDEVLGHIQKGESVECAICMESPDDPVF 929
Query: 128 TSCEHVFCNACLVDFSASMDPVLCPSC 154
T C H FC CL + + CP C
Sbjct: 930 TPCAHQFCRECLFNCWGTSMGGKCPIC 956