Miyakogusa Predicted Gene

Lj3g3v2923170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2923170.1 tr|I1LRN4|I1LRN4_SOYBN Condensin complex subunit
2 OS=Glycine max PE=3 SV=1,78.89,0,Cnd2,Condensin complex subunit
2/barren; GB DEF: HYPOTHETICAL PROTEIN AT2G32590,NULL; FAMILY NOT
NAM,CUFF.44994.1
         (671 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g050060.1 | condensin complex subunit 2 | HC | chr4:176941...  1075   0.0  
Medtr2g087880.1 | condensin complex subunit 2 | HC | chr2:369925...   852   0.0  

>Medtr4g050060.1 | condensin complex subunit 2 | HC |
           chr4:17694113-17688616 | 20130731
          Length = 666

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/670 (79%), Positives = 579/670 (86%), Gaps = 9/670 (1%)

Query: 1   MAETLSPNPALGQKQRLPVAARIQSPTSPFFLGSNDDQLEXXXXXXXXXXXXXXKGLAVS 60
           MAETLSP      K RLPVAARIQSPTSPF LGSNDDQLE              K L VS
Sbjct: 1   MAETLSPT-----KHRLPVAARIQSPTSPFILGSNDDQLERAQARAARAAAIRRKNLPVS 55

Query: 61  QSFNSDADPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEDEPDAET 120
           QS  +D+DPCLNKQQI DLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAE+E D ET
Sbjct: 56  QSLEADSDPCLNKQQIFDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDTET 115

Query: 121 NFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQDAEEDTTAEGDNIESGQEGNR 180
           NFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQ+AE+DTT EG N+E+GQEG+R
Sbjct: 116 NFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGVNVENGQEGSR 175

Query: 181 KETDKKLSPLSTLEPSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGG 240
           KETDKKLSPLSTLE SFE LNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGG
Sbjct: 176 KETDKKLSPLSTLESSFEVLNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGG 235

Query: 241 CRVLFDSQEVPAKCMEGQNRQDISDSIDLSFLRDCIEQMLLDIHVKDEISPTLSIIVNQF 300
           CR+LFDS EVPAKCME QN  DISD+IDLSF RDC+E+++L++ VKDEISPTL  IVNQF
Sbjct: 236 CRLLFDSLEVPAKCMESQNEPDISDTIDLSFARDCVEEIVLEMRVKDEISPTLRTIVNQF 295

Query: 301 DEKNRRPTDFQLHGQNSAEEFDADVNCENGADREEYENCTTWNXXXXXXXXXXXLGSNDA 360
           DE N+RPT FQL GQNSAEE DAD NCENGADREEY+N  TW+           LGSNDA
Sbjct: 296 DENNKRPTGFQLPGQNSAEELDADFNCENGADREEYDNGATWSDDHDDQPVIADLGSNDA 355

Query: 361 DPSFPNYPQENEQFPSPDSDTDERLENVDGYLFLNLGFSSKQNAWAGPDHWKYRKSKVSE 420
           DPSF +YPQENEQFPS DSD D+R ENVDG+LFL+LGF+SK NAWAGPDHWKY+KSKVSE
Sbjct: 356 DPSFSSYPQENEQFPSTDSDMDDRFENVDGFLFLSLGFNSKHNAWAGPDHWKYKKSKVSE 415

Query: 421 VQPTSEDGPTLKTKQPRSKKQAEVDLDFTGSLEKNLLDIFAPPKNPKSLLLPESRVPCNT 480
           VQPTSEDG TLK +Q +SKKQAEVDLDFT SLEK+L DIFAPPKNPK+LLLPESR PCNT
Sbjct: 416 VQPTSEDGSTLKPRQTKSKKQAEVDLDFTNSLEKDLSDIFAPPKNPKTLLLPESRSPCNT 475

Query: 481 KLPEDCHYQPEDLVKLFLLPNVKCLGRRTKRFS--DGSREQSNEYESFPSWDNGSV-GGG 537
           KLPEDCHYQPE+LVKLFLLP+VKCLGRR KRFS  DGSR+Q NE + FPSWDNGS  G  
Sbjct: 476 KLPEDCHYQPEELVKLFLLPDVKCLGRRAKRFSDADGSRDQFNENDPFPSWDNGSACGDD 535

Query: 538 ESVDYEGDHHSDMEDPGTLISQPRLVNKIEVQYDKTSKQVDVQALKVTLWDHVQESVKLT 597
           E+ DYEGDHHSD+EDPGTLI+QPR V+KIEVQYDKTSKQVDVQ LKVTLWDHVQESVKL+
Sbjct: 536 EAGDYEGDHHSDIEDPGTLITQPRQVSKIEVQYDKTSKQVDVQVLKVTLWDHVQESVKLS 595

Query: 598 S-EGQKEMISFRNMLANFPSECNAASNISDISPHLCFICLLHLANENGLSIQSTPNLDDL 656
             + Q+E++SF+N+LANFP ECNAA+NISDISPHLCFICLLHLANE GLSIQS PNLDDL
Sbjct: 596 PVQDQEEIVSFKNLLANFPGECNAAANISDISPHLCFICLLHLANEKGLSIQSFPNLDDL 655

Query: 657 AIYLPQVGDT 666
           +I LP VGDT
Sbjct: 656 SICLPPVGDT 665


>Medtr2g087880.1 | condensin complex subunit 2 | HC |
           chr2:36992549-36998312 | 20130731
          Length = 656

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/667 (64%), Positives = 511/667 (76%), Gaps = 18/667 (2%)

Query: 1   MAETLSPNPALGQKQRLPVAARIQSPTSPFFLGSNDDQLEXXXXXXXXXXXXXXKGLAVS 60
           MAE  SPNP    K+RLP      +P + FF+GSNDDQLE                    
Sbjct: 1   MAELASPNPTTVHKKRLP------TPATTFFVGSNDDQLERAAARAARAAAIRRT--VNF 52

Query: 61  QSFNSDADPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEDEPDAET 120
           QS  SD+DPCLNKQQIL+LF NCIKLASENKINQKNTW+L+LIDHLTDII+AED+ + ET
Sbjct: 53  QSQPSDSDPCLNKQQILELFHNCIKLASENKINQKNTWDLDLIDHLTDIIRAEDDNNTET 112

Query: 121 NFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQDAEEDTTAEGDNIESGQEGNR 180
           NFQ ASCTLEAGVKIYSLRVDSV+SEAYKVL  M+R GQ+ E+D T    N E G+E ++
Sbjct: 113 NFQMASCTLEAGVKIYSLRVDSVYSEAYKVLARMSRVGQETEQDATLASVNGEGGREESK 172

Query: 181 KETDKKLSPLSTLEPSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGG 240
           K  DKKLSPLSTLE SFEALNVKKFD AF VDPLYR+T+AKFDEGGAKGLLMNNLGVYG 
Sbjct: 173 KGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRKTSAKFDEGGAKGLLMNNLGVYGR 232

Query: 241 CRVLFDSQEVPAKCMEGQNRQDISDSIDLSFLRDCIEQMLLDIHVKDEISPTLSIIVNQF 300
           CRVLFDS +VP K +  QN  D+SD++DLSF RDC+EQML D+ +K+EISPTL +IVN  
Sbjct: 233 CRVLFDSLDVPGKYLASQNEHDVSDTVDLSFARDCVEQMLSDMQIKEEISPTLRVIVNIL 292

Query: 301 DEKNRRPTDFQLHGQNSAEEFDADVNCENGADREEYENCTTWNXXXXXXXXXXXLGSNDA 360
           DE +RRP DFQ +GQ S++EFDA ++CE GA+ E+YEN  T             +GSNDA
Sbjct: 293 DETDRRPFDFQSNGQKSSQEFDAAIDCEVGAEMEDYENFPTGPYEHDNQTFVNEMGSNDA 352

Query: 361 DPSFPNYPQENEQFPSPDSDTDERLENVDGYLFLNLGFSSKQNAWAGPDHWKYRKSK--V 418
           DP+ P+YPQE E FPS D + DE   NVD YL  +LGF SK+NAWAGPDHW+Y+K+K   
Sbjct: 353 DPNVPSYPQEEEPFPSQDLEMDELFGNVDEYLSFSLGFRSKKNAWAGPDHWQYQKAKGSE 412

Query: 419 SEVQPTSEDGPTLKTKQPRSKKQAEVDLDFTGSLEKNLLDIFAPPKNPKSLLLPESRVPC 478
           SEV  ++ED  TLKT+ P++ KQ EVDLDFT  L K   DIFAPPK+PKSLLL E+R  C
Sbjct: 413 SEVHCSTEDASTLKTRPPKTMKQIEVDLDFTNFLGKTPPDIFAPPKSPKSLLLSENRPHC 472

Query: 479 NTKLPEDCHYQPEDLVKLFLLPNVKCLGRRTKR----FSDGSREQSNEYESFPSWDNGSV 534
            TKLPEDCHY+PE+LVKLFLLP+VKCLGRRT++    ++DGS EQ N  E F SWDNGSV
Sbjct: 473 VTKLPEDCHYEPENLVKLFLLPDVKCLGRRTRKLSGVYTDGSTEQCNNNEPFNSWDNGSV 532

Query: 535 GGGESVDYEGDHHSDMEDPGTLISQPRLVNKIEVQYDKTSKQVDVQALKVTLWDHVQESV 594
             GE   Y+ D HSDM+D  TLISQ R +NKIEVQYDKTSKQVDVQALK+TLW+H++ESV
Sbjct: 533 CDGE---YD-DAHSDMDDSSTLISQARQINKIEVQYDKTSKQVDVQALKLTLWNHIEESV 588

Query: 595 KLTSEGQKEMISFRNMLANFPSECNAASNISDISPHLCFICLLHLANENGLSIQSTPNLD 654
            L  +G+KE +SFR++LANFPSECNA++ ++DISPHLCFICLLHLANE  LSIQS P+LD
Sbjct: 589 HLRFQGEKETVSFRDVLANFPSECNASATVTDISPHLCFICLLHLANEKELSIQSCPDLD 648

Query: 655 DLAIYLP 661
           DL IY+P
Sbjct: 649 DLHIYMP 655