Miyakogusa Predicted Gene
- Lj3g3v2923160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2923160.1 Non Characterized Hit- tr|J3LZB8|J3LZB8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,52.75,5e-19,seg,NULL; FAMILY NOT NAMED,NULL; DUF1068,Protein
of unknown function DUF1068,CUFF.44995.1
(186 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g050050.1 | plant/T7A14-6 protein | HC | chr4:17684049-176... 294 3e-80
Medtr4g050050.2 | plant/T7A14-6 protein | HC | chr4:17684100-176... 240 7e-64
Medtr2g024090.1 | plant/T7A14-6 protein | HC | chr2:8568277-8569... 175 2e-44
Medtr2g450100.1 | transmembrane protein, putative | HC | chr2:22... 124 7e-29
Medtr7g113900.1 | transmembrane protein, putative | HC | chr7:46... 87 1e-17
Medtr2g087950.1 | cellulose synthase-like protein | HC | chr2:37... 53 1e-07
>Medtr4g050050.1 | plant/T7A14-6 protein | HC |
chr4:17684049-17687047 | 20130731
Length = 193
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/192 (78%), Positives = 161/192 (83%), Gaps = 7/192 (3%)
Query: 1 MNQTXXXXXXXXXXXXXXCIASYILAPPLYWHFREGLAAVKHSSS----SCAPCLCDCSS 56
MN++ CIA YIL PPLYWHF+EGLAAVKHSSS +C+PCLCDCSS
Sbjct: 3 MNKSSVTLLRATLIIVAVCIAGYILGPPLYWHFKEGLAAVKHSSSSSSSTCSPCLCDCSS 62
Query: 57 QQPILSIPQGLSNTSFGDCAKPDPEVTGDTEKNFAELLSEELKLRENVALENQRRADMAL 116
Q P SIPQGLSN SFGDCAKPDPEV GDTEKNFAELLSEELKLRE+ ALENQRRADMAL
Sbjct: 63 Q-PTFSIPQGLSNISFGDCAKPDPEVNGDTEKNFAELLSEELKLRESQALENQRRADMAL 121
Query: 117 LEAKKIASQYQKEADKCNSGMETCEGAREKAELALVAQKKLSALWELRARQKGWKEGVTK 176
LEAKK+ASQYQKEADKCNSGMETCE AREKAELALVAQKK+++LWELRARQKGWKEG K
Sbjct: 122 LEAKKVASQYQKEADKCNSGMETCEQAREKAELALVAQKKVTSLWELRARQKGWKEGAAK 181
Query: 177 S--QSQGKVQSS 186
S QSQGKVQ+S
Sbjct: 182 SNTQSQGKVQTS 193
>Medtr4g050050.2 | plant/T7A14-6 protein | HC |
chr4:17684100-17686967 | 20130731
Length = 160
Score = 240 bits (612), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 125/188 (66%), Positives = 134/188 (71%), Gaps = 32/188 (17%)
Query: 1 MNQTXXXXXXXXXXXXXXCIASYILAPPLYWHFREGLAAVKHSSSSCAPCLCDCSSQQPI 60
MN++ CIA YIL PPLYWHF+EGL
Sbjct: 3 MNKSSVTLLRATLIIVAVCIAGYILGPPLYWHFKEGL----------------------- 39
Query: 61 LSIPQGLSNTSFGDCAKPDPEVTGDTEKNFAELLSEELKLRENVALENQRRADMALLEAK 120
SN SFGDCAKPDPEV GDTEKNFAELLSEELKLRE+ ALENQRRADMALLEAK
Sbjct: 40 -------SNISFGDCAKPDPEVNGDTEKNFAELLSEELKLRESQALENQRRADMALLEAK 92
Query: 121 KIASQYQKEADKCNSGMETCEGAREKAELALVAQKKLSALWELRARQKGWKEGVTKS--Q 178
K+ASQYQKEADKCNSGMETCE AREKAELALVAQKK+++LWELRARQKGWKEG KS Q
Sbjct: 93 KVASQYQKEADKCNSGMETCEQAREKAELALVAQKKVTSLWELRARQKGWKEGAAKSNTQ 152
Query: 179 SQGKVQSS 186
SQGKVQ+S
Sbjct: 153 SQGKVQTS 160
>Medtr2g024090.1 | plant/T7A14-6 protein | HC | chr2:8568277-8569938
| 20130731
Length = 176
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 113/153 (73%), Gaps = 4/153 (2%)
Query: 19 CIASYILAPPLYWHFREGLAAVKHSSSSCAPCLCDCSSQQPILSIPQGLSNTSFGDCAKP 78
C+ Y+ PPL+W + L++ SSSC PC CDCS Q P+LSIP+GLSN S DC +
Sbjct: 19 CLTCYLAGPPLFWALNDTLSS---VSSSCPPCHCDCSLQ-PLLSIPEGLSNNSILDCMRQ 74
Query: 79 DPEVTGDTEKNFAELLSEELKLRENVALENQRRADMALLEAKKIASQYQKEADKCNSGME 138
DPEV+ + K+F +LL EELK +E A QR AD+ LLE+KKIASQYQKEADKCNSGME
Sbjct: 75 DPEVSEEAGKSFMDLLHEELKQKEAEAERKQRHADILLLESKKIASQYQKEADKCNSGME 134
Query: 139 TCEGAREKAELALVAQKKLSALWELRARQKGWK 171
TCE ARE+AE AL Q K +ALWELRA+Q+GWK
Sbjct: 135 TCEEARERAETALENQMKETALWELRAQQRGWK 167
>Medtr2g450100.1 | transmembrane protein, putative | HC |
chr2:22100013-22097586 | 20130731
Length = 177
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 21 ASYILAPPLYWHFREGLAAVKHSSSSCAPCLCDCSSQQPILSIPQGLSNTSFGDCAKPDP 80
A + P LYW F+ G+ + SSC PC+C C + + GL+N S DC DP
Sbjct: 26 ALMVCGPALYWRFKNGI-TLNSKLSSCPPCICHCPPPLSLFQLAPGLANLSVSDCGGNDP 84
Query: 81 EVTGDTEKNFAELLSEELKLRENVALENQRRADMALLEAKKIASQYQKEADKCNSGMETC 140
E+ + EK F +LL+EELKL+E+V+ + R ++ L EAK++ SQYQ+EA KC S ETC
Sbjct: 85 ELREEMEKQFVDLLTEELKLQESVSEAHTRHMNITLAEAKRVGSQYQREAGKCVSATETC 144
Query: 141 EGAREKAELALVAQKKLSALWELRARQKGWK 171
E ARE+AE L ++K++ +WE RARQ GW+
Sbjct: 145 EQAREQAEAMLTKERKITLVWEKRARQMGWE 175
>Medtr7g113900.1 | transmembrane protein, putative | HC |
chr7:46958058-46956741 | 20130731
Length = 164
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 22/156 (14%)
Query: 19 CIASYILAPPLYWHFREGLAAVKHSSSSCAPCL-CDCSS-QQPILSIPQGLSNTSFGDCA 76
C + + PP W F++ S C C C CSS + P+ S+ DC
Sbjct: 27 CYIVFTIGPPSRWRFKQ---------SPCPQCHHCYCSSVEYPLGSL----------DCG 67
Query: 77 KPDPEVTGDTEKNFAELLSEELKLRENVALENQRRADMALLEAKKIASQYQKEADKCNSG 136
K DP + + K+ +LSEELKL++ VA E + ++ A+ S Y+KE +KC+ G
Sbjct: 68 KHDPAME-EMNKDPLSMLSEELKLQKIVANETLEQTKRLVINARNTFSHYKKEVEKCSIG 126
Query: 137 METCEGAREKAELALVAQKKLSALWELRARQKGWKE 172
METCE ARE+AE LV +++L+ALWE RAR GWK+
Sbjct: 127 METCEEARERAEAELVEERRLTALWEERARDYGWKD 162
>Medtr2g087950.1 | cellulose synthase-like protein | HC |
chr2:37028643-37022712 | 20130731
Length = 781
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 79 DPEVTGDTEKNFAELLSEELKLRENVALENQRRADMALLEAKKIASQYQKEAD 131
+PE+ +TEKNF EL E+LK+RE AL+ QR ++ +LE+KKI Q + D
Sbjct: 729 NPELNRETEKNFVELFLEDLKVREAKALKKQRHVNVVVLESKKIVIQEWERRD 781