Miyakogusa Predicted Gene

Lj3g3v2908510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2908510.1 tr|C1MPK3|C1MPK3_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_5693,31.14,0.0000000003,coiled-coil,NULL; L9
N-domain-like,Ribosomal protein L9/RNase H1, N-terminal; 50S RIBOSOMAL
PROTEIN ,CUFF.45075.1
         (222 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g038540.1 | 50S ribosomal L9-like protein | HC | chr5:1693...   387   e-108
Medtr1g067700.1 | 50S ribosomal L9-like protein | HC | chr1:2923...   374   e-104

>Medtr5g038540.1 | 50S ribosomal L9-like protein | HC |
           chr5:16930175-16925153 | 20130731
          Length = 222

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/222 (84%), Positives = 205/222 (92%)

Query: 1   MGYLQYGRLGVRQIIRFRDSSSNSAVVNPLLYASQGLRYNRKLQVILTTDIDKLGKAGDT 60
           MGYLQ+GR  VRQI+RF+D  +   VVNPL+YASQGLRYNRKLQVILTT+IDKLGKAG+T
Sbjct: 1   MGYLQFGRYSVRQIVRFKDVVNEGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAGET 60

Query: 61  VKVAPGYFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEEKQEDVTVVKESKEDLMKE 120
           VKVAPG+FRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEE KQEDV VV ESKEDLMKE
Sbjct: 61  VKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKE 120

Query: 121 YEAAALRLDKAKLVLRRLIDVKKAKARASKDEPLEIRLPVTKEVLVAEVARQLCVNIAPE 180
           YE AAL LDKAKLVLRRLIDVKKAKAR SKDEPLE+++PV+K  LVAEVARQLCVNI  E
Sbjct: 121 YERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKNALVAEVARQLCVNITAE 180

Query: 181 NLHLPSPLSTVGEYEVPLRLPRSIPLPEGKVNWSLQVKVRSK 222
           NLHLP+PLST+GEYEVPLRLPRSIPLPEGK+NW+L+VK+RSK
Sbjct: 181 NLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 222


>Medtr1g067700.1 | 50S ribosomal L9-like protein | HC |
           chr1:29230907-29224500 | 20130731
          Length = 224

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/224 (82%), Positives = 205/224 (91%), Gaps = 2/224 (0%)

Query: 1   MGYLQYGRLGVRQIIRFRDSSSNSAVVNP--LLYASQGLRYNRKLQVILTTDIDKLGKAG 58
           MGYLQ+GR GVRQIIRF+D+ + +  V    L+YASQGLRYNRKLQVILTT+IDKLGKAG
Sbjct: 1   MGYLQFGRHGVRQIIRFKDAVNVNDSVVVNRLMYASQGLRYNRKLQVILTTNIDKLGKAG 60

Query: 59  DTVKVAPGYFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEEKQEDVTVVKESKEDLM 118
           +TVKVAPG+FRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEE KQEDV VV ESKEDLM
Sbjct: 61  ETVKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLM 120

Query: 119 KEYEAAALRLDKAKLVLRRLIDVKKAKARASKDEPLEIRLPVTKEVLVAEVARQLCVNIA 178
           KEYE A L LDKAKLVLRRLIDVKKAKAR SKDEPLE+++PV+K+ LVAEVARQLCVNI 
Sbjct: 121 KEYERAGLILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKKALVAEVARQLCVNIT 180

Query: 179 PENLHLPSPLSTVGEYEVPLRLPRSIPLPEGKVNWSLQVKVRSK 222
            ENLHLP+PLST+GEYEVPLRLPRSIPLPEGK+NW+L+VK+RSK
Sbjct: 181 AENLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 224