Miyakogusa Predicted Gene
- Lj3g3v2906190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2906190.1 Non Characterized Hit- tr|J9F006|J9F006_9SPIT
Uncharacterized protein OS=Oxytricha trifallax PE=4
SV,48.98,3e-18,POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED,NULL;
DNA_pol_A_exo1,3'-5' exonuclease domain; HRDC,Hel,gene.g49922.t1.1
(511 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1... 298 8e-81
Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1... 298 1e-80
Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC | chr6:9... 86 6e-17
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415... 86 1e-16
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415... 85 2e-16
Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC | chr6:9... 84 2e-16
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172... 84 2e-16
>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
chr4:17080440-17072522 | 20130731
Length = 930
Score = 298 bits (763), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 165/199 (82%)
Query: 72 QFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEM 131
QF VRQLCTWRDLMARIHDESLKYVLSDQAI ALAS+ PA+++EIY +I +TD+N E
Sbjct: 347 QFLSIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASRLPASNSEIYNSIVQTDVNAET 406
Query: 132 GLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLV 191
GL+ CSHL DI LLANKLVN GDIYSVI+QKCLGQNG C+L+I NYALLV
Sbjct: 407 GLSSSIPSPSPVVCSHLTDICHLLANKLVNHGDIYSVILQKCLGQNGNCKLNISNYALLV 466
Query: 192 NGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRK 251
N + RPT K S LKN +Q S+KASR+LFV+KFSCK+PVYHNCRI+ANDGRLLCYCDRK
Sbjct: 467 NCNVRPTLSSKRSSLKNPRQHSKKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRK 526
Query: 252 KLEWYLSRDLAKLVDDDPP 270
KLEWYLSRDLAK+VD++PP
Sbjct: 527 KLEWYLSRDLAKVVDEEPP 545
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 187/306 (61%), Gaps = 67/306 (21%)
Query: 272 KYKRKIAAEYGIPLYVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRRE 331
KYKRK+A+E+GIPLYVR VIHP ++ E+ +EGGVSPLQLR+AA+ALLRHGPRMP DRRE
Sbjct: 625 KYKRKVASEFGIPLYVRRVIHPGQETEKPNDEGGVSPLQLRSAAVALLRHGPRMPHDRRE 684
Query: 332 ELTE---------------------------------------------STAAVPQLENH 346
ELTE S +AVP N
Sbjct: 685 ELTEIIKTYYGGREISKEDLEKALQVGMTPHERRKFEKKRGVSSKHSTGSASAVPYEGND 744
Query: 347 VACATG--DEDALNDDAHDGELLME--------KDDLGNPLLASDLAVDAAISNG----- 391
A G + D L D DG + E +DD G P LASDLAVD A SNG
Sbjct: 745 TDYAPGMSNGDTLKVDTLDGSYVNEETRSGDNRQDDSGKPSLASDLAVDKATSNGNTIVV 804
Query: 392 -----DYNEGGNSL-NVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGN 445
D +E SL + D SL++ PN VSD + K E++T AKH+SKLSLLGHGPHG
Sbjct: 805 KTTDHDDDETSYSLVDTDESLNKMQPNVVSDE-ESIKDEDTTQAKHHSKLSLLGHGPHGK 863
Query: 446 LVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKR 505
VV+HLLKE+GE+GI EFCQRWRQVFVDA+ PRFLPGGWDVKHSGRR+FG+FSVYN KR
Sbjct: 864 QVVDHLLKEYGEDGIREFCQRWRQVFVDALKPRFLPGGWDVKHSGRRDFGEFSVYNHQKR 923
Query: 506 VDAVSM 511
A SM
Sbjct: 924 ETADSM 929
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 70/72 (97%)
Query: 1 MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
M ILRPVFA+PSICKVFHGADND+LWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 175 MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 234
Query: 61 TYCGVVTNKLLQ 72
TYCGV TNKLLQ
Sbjct: 235 TYCGVNTNKLLQ 246
>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
chr4:17080472-17072108 | 20130731
Length = 908
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 165/199 (82%)
Query: 72 QFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEM 131
QF VRQLCTWRDLMARIHDESLKYVLSDQAI ALAS+ PA+++EIY +I +TD+N E
Sbjct: 347 QFLSIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASRLPASNSEIYNSIVQTDVNAET 406
Query: 132 GLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLV 191
GL+ CSHL DI LLANKLVN GDIYSVI+QKCLGQNG C+L+I NYALLV
Sbjct: 407 GLSSSIPSPSPVVCSHLTDICHLLANKLVNHGDIYSVILQKCLGQNGNCKLNISNYALLV 466
Query: 192 NGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRK 251
N + RPT K S LKN +Q S+KASR+LFV+KFSCK+PVYHNCRI+ANDGRLLCYCDRK
Sbjct: 467 NCNVRPTLSSKRSSLKNPRQHSKKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRK 526
Query: 252 KLEWYLSRDLAKLVDDDPP 270
KLEWYLSRDLAK+VD++PP
Sbjct: 527 KLEWYLSRDLAKVVDEEPP 545
Score = 243 bits (619), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/283 (50%), Positives = 169/283 (59%), Gaps = 67/283 (23%)
Query: 272 KYKRKIAAEYGIPLYVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRRE 331
KYKRK+A+E+GIPLYVR VIHP ++ E+ +EGGVSPLQLR+AA+ALLRHGPRMP DRRE
Sbjct: 625 KYKRKVASEFGIPLYVRRVIHPGQETEKPNDEGGVSPLQLRSAAVALLRHGPRMPHDRRE 684
Query: 332 ELTE---------------------------------------------STAAVPQLENH 346
ELTE S +AVP N
Sbjct: 685 ELTEIIKTYYGGREISKEDLEKALQVGMTPHERRKFEKKRGVSSKHSTGSASAVPYEGND 744
Query: 347 VACATG--DEDALNDDAHDGELLME--------KDDLGNPLLASDLAVDAAISNG----- 391
A G + D L D DG + E +DD G P LASDLAVD A SNG
Sbjct: 745 TDYAPGMSNGDTLKVDTLDGSYVNEETRSGDNRQDDSGKPSLASDLAVDKATSNGNTIVV 804
Query: 392 -----DYNEGGNSL-NVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGN 445
D +E SL + D SL++ PN VSD + K E++T AKH+SKLSLLGHGPHG
Sbjct: 805 KTTDHDDDETSYSLVDTDESLNKMQPNVVSDE-ESIKDEDTTQAKHHSKLSLLGHGPHGK 863
Query: 446 LVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKH 488
VV+HLLKE+GE+GI EFCQRWRQVFVDA+ PRFLPGGWDVKH
Sbjct: 864 QVVDHLLKEYGEDGIREFCQRWRQVFVDALKPRFLPGGWDVKH 906
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 70/72 (97%)
Query: 1 MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
M ILRPVFA+PSICKVFHGADND+LWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 175 MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 234
Query: 61 TYCGVVTNKLLQ 72
TYCGV TNKLLQ
Sbjct: 235 TYCGVNTNKLLQ 246
>Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC |
chr6:9716121-9707250 | 20130731
Length = 882
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 9/98 (9%)
Query: 4 LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
LR VF +PS KV HGAD DI+WLQRDF IYV N+FDT +A +VL + SL +LL +C
Sbjct: 324 LREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMFDTGQASKVLKLERNSLEHLLNHFC 383
Query: 64 GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVLSD 101
+ NK ++Q+ WR + I DE L+Y D
Sbjct: 384 EITANK--EYQN-----ADWR--LRPIPDEMLRYARED 412
>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
20130731
Length = 693
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 4 LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
LR VF +P+ KV HGAD DI+WLQRDF IY+ N+FDT +A VL + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333
Query: 64 GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
GV NK ++Q+ + D+M + E Y+L
Sbjct: 334 GVTANK--EYQNADWRARPLPDVMIKYGREDTHYLL 367
>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
20130731
Length = 598
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 4 LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
LR VF +P+ KV HGAD DI+WLQRDF IY+ N+FDT +A VL + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333
Query: 64 GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
GV NK ++Q+ + D+M + E Y+L
Sbjct: 334 GVTANK--EYQNADWRARPLPDVMIKYGREDTHYLL 367
>Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC |
chr6:9716121-9707250 | 20130731
Length = 651
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 9/98 (9%)
Query: 4 LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
LR VF +PS KV HGAD DI+WLQRDF IYV N+FDT +A +VL + SL +LL +C
Sbjct: 324 LREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMFDTGQASKVLKLERNSLEHLLNHFC 383
Query: 64 GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVLSD 101
+ NK ++Q+ WR + I DE L+Y D
Sbjct: 384 EITANK--EYQN-----ADWR--LRPIPDEMLRYARED 412
>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
20130731
Length = 438
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 4 LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
LR VF +P+ KV HGAD DI+WLQRDF IY+ N+FDT +A VL + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333
Query: 64 GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
GV NK ++Q+ + D+M + E Y+L
Sbjct: 334 GVTANK--EYQNADWRARPLPDVMIKYGREDTHYLL 367