Miyakogusa Predicted Gene

Lj3g3v2905160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2905160.1 Non Characterized Hit- tr|I1KFD3|I1KFD3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.59,0,HRDC,Helicase/RNase D C-terminal, HRDC domain; no
description,NULL; POLYMYOSITIS/SCLERODERMA
AUTOANT,NODE_61206_length_2535_cov_8.537278.path2.1
         (712 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1...  1095   0.0  
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1...  1095   0.0  
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415...   162   9e-40
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415...   162   1e-39
Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC | chr6:9...   160   4e-39
Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC | chr6:9...   158   1e-38
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172...   137   3e-32

>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
           chr4:17080472-17072108 | 20130731
          Length = 908

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/733 (75%), Positives = 612/733 (83%), Gaps = 22/733 (3%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVFA+PSICKVFHGADND+LWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 175 MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 234

Query: 61  TYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDK 120
           TYCGV TNKLLQREDWRQRPLSAEM+HYA TDAHYLLYIANC+I+EL+QLDNENS SDDK
Sbjct: 235 TYCGVNTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLIDELKQLDNENSCSDDK 294

Query: 121 IQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQ 180
             FVLEA RRSNMICLQLFTK+IEASPGES+ LSL+SRH S++  PSISNETQF   VRQ
Sbjct: 295 FHFVLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQ 354

Query: 181 LCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXXXX 240
           LCTWRDLMARIHDESLKYVLSDQAI ALAS+ PA+++EIY +I +TD+N E GL+     
Sbjct: 355 LCTWRDLMARIHDESLKYVLSDQAIVALASRLPASNSEIYNSIVQTDVNAETGLSSSIPS 414

Query: 241 XXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPRPTS 300
                CSHL DI  LLANKLVN GDIYSVI+QKCLGQNG C+L+I NYALLVN + RPT 
Sbjct: 415 PSPVVCSHLTDICHLLANKLVNHGDIYSVILQKCLGQNGNCKLNISNYALLVNCNVRPTL 474

Query: 301 VHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSR 360
             K S LKN +Q S+KASR+LFV+KFSCK+PVYHNCRI+ANDGRLLCYCDRKKLEWYLSR
Sbjct: 475 SSKRSSLKNPRQHSKKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSR 534

Query: 361 DLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 420
           DLAK+VD++PP IMLLFEPKGRPEDE NDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 535 DLAKVVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 594

Query: 421 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPREKNEEQT 480
           HFPEHLKSHRSHDIVLLCVDCHE AHAAAEKYKRK+A+E+GIPLYVR VIHP ++ E+  
Sbjct: 595 HFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKYKRKVASEFGIPLYVRRVIHPGQETEKPN 654

Query: 481 EEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTP 540
           +EGGVSPLQLR+AA+ALLRHGPRMP DRREELTEI+K YYGGREI++EDLE ALQVGMTP
Sbjct: 655 DEGGVSPLQLRSAAVALLRHGPRMPHDRREELTEIIKTYYGGREISKEDLEKALQVGMTP 714

Query: 541 QERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPG--DEDALNDDAHDGELLME----- 593
            ERR+FEKKRG S KHST S +AVP   ND   APG  + D L  D  DG  + E     
Sbjct: 715 HERRKFEKKRGVSSKHSTGSASAVPYEGNDTDYAPGMSNGDTLKVDTLDGSYVNEETRSG 774

Query: 594 ---KDDLGNPLLASDLAVDAAISNG----------DYNEGGNSL-NVDNSLSRTLPNGVS 639
              +DD G P LASDLAVD A SNG          D +E   SL + D SL++  PN VS
Sbjct: 775 DNRQDDSGKPSLASDLAVDKATSNGNTIVVKTTDHDDDETSYSLVDTDESLNKMQPNVVS 834

Query: 640 DLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAV 699
           D  +  K E++T AKH+SKLSLLGHGPHG  VV+HLLKE+GE+GI EFCQRWRQVFVDA+
Sbjct: 835 DE-ESIKDEDTTQAKHHSKLSLLGHGPHGKQVVDHLLKEYGEDGIREFCQRWRQVFVDAL 893

Query: 700 NPRFLPGGWDVKH 712
            PRFLPGGWDVKH
Sbjct: 894 KPRFLPGGWDVKH 906


>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
           chr4:17080440-17072522 | 20130731
          Length = 930

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/733 (75%), Positives = 612/733 (83%), Gaps = 22/733 (3%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVFA+PSICKVFHGADND+LWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 175 MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 234

Query: 61  TYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDK 120
           TYCGV TNKLLQREDWRQRPLSAEM+HYA TDAHYLLYIANC+I+EL+QLDNENS SDDK
Sbjct: 235 TYCGVNTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLIDELKQLDNENSCSDDK 294

Query: 121 IQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQ 180
             FVLEA RRSNMICLQLFTK+IEASPGES+ LSL+SRH S++  PSISNETQF   VRQ
Sbjct: 295 FHFVLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQ 354

Query: 181 LCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXXXX 240
           LCTWRDLMARIHDESLKYVLSDQAI ALAS+ PA+++EIY +I +TD+N E GL+     
Sbjct: 355 LCTWRDLMARIHDESLKYVLSDQAIVALASRLPASNSEIYNSIVQTDVNAETGLSSSIPS 414

Query: 241 XXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPRPTS 300
                CSHL DI  LLANKLVN GDIYSVI+QKCLGQNG C+L+I NYALLVN + RPT 
Sbjct: 415 PSPVVCSHLTDICHLLANKLVNHGDIYSVILQKCLGQNGNCKLNISNYALLVNCNVRPTL 474

Query: 301 VHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSR 360
             K S LKN +Q S+KASR+LFV+KFSCK+PVYHNCRI+ANDGRLLCYCDRKKLEWYLSR
Sbjct: 475 SSKRSSLKNPRQHSKKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSR 534

Query: 361 DLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 420
           DLAK+VD++PP IMLLFEPKGRPEDE NDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 535 DLAKVVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 594

Query: 421 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPREKNEEQT 480
           HFPEHLKSHRSHDIVLLCVDCHE AHAAAEKYKRK+A+E+GIPLYVR VIHP ++ E+  
Sbjct: 595 HFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKYKRKVASEFGIPLYVRRVIHPGQETEKPN 654

Query: 481 EEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTP 540
           +EGGVSPLQLR+AA+ALLRHGPRMP DRREELTEI+K YYGGREI++EDLE ALQVGMTP
Sbjct: 655 DEGGVSPLQLRSAAVALLRHGPRMPHDRREELTEIIKTYYGGREISKEDLEKALQVGMTP 714

Query: 541 QERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPG--DEDALNDDAHDGELLME----- 593
            ERR+FEKKRG S KHST S +AVP   ND   APG  + D L  D  DG  + E     
Sbjct: 715 HERRKFEKKRGVSSKHSTGSASAVPYEGNDTDYAPGMSNGDTLKVDTLDGSYVNEETRSG 774

Query: 594 ---KDDLGNPLLASDLAVDAAISNG----------DYNEGGNSL-NVDNSLSRTLPNGVS 639
              +DD G P LASDLAVD A SNG          D +E   SL + D SL++  PN VS
Sbjct: 775 DNRQDDSGKPSLASDLAVDKATSNGNTIVVKTTDHDDDETSYSLVDTDESLNKMQPNVVS 834

Query: 640 DLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAV 699
           D  +  K E++T AKH+SKLSLLGHGPHG  VV+HLLKE+GE+GI EFCQRWRQVFVDA+
Sbjct: 835 DE-ESIKDEDTTQAKHHSKLSLLGHGPHGKQVVDHLLKEYGEDGIREFCQRWRQVFVDAL 893

Query: 700 NPRFLPGGWDVKH 712
            PRFLPGGWDVKH
Sbjct: 894 KPRFLPGGWDVKH 906


>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
           20130731
          Length = 598

 Score =  162 bits (411), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 13/221 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +P+  KV HGAD DI+WLQRDF IY+ N+FDT +A  VL   + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q  DWR RPL   M+ Y   D HYLLYI + M  +L +L  E+   DD +  
Sbjct: 334 GVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPL-- 391

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            LE  +RS  +C+QL+ KD+       ++  L     + Q +  +S           L  
Sbjct: 392 -LEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQLAVVSG----------LYE 440

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIA 224
           WRD++AR  DES  Y+L ++ I  +A   P T + + + IA
Sbjct: 441 WRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIA 481


>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
           20130731
          Length = 693

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 13/221 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +P+  KV HGAD DI+WLQRDF IY+ N+FDT +A  VL   + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q  DWR RPL   M+ Y   D HYLLYI + M  +L +L  E+   DD +  
Sbjct: 334 GVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPL-- 391

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            LE  +RS  +C+QL+ KD+       ++  L     + Q +  +S           L  
Sbjct: 392 -LEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQLAVVSG----------LYE 440

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIA 224
           WRD++AR  DES  Y+L ++ I  +A   P T + + + IA
Sbjct: 441 WRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIA 481


>Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 882

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 13/220 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +PS  KV HGAD DI+WLQRDF IYV N+FDT +A +VL   + SL +LL  +C
Sbjct: 324 LREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMFDTGQASKVLKLERNSLEHLLNHFC 383

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
            +  NK  Q  DWR RP+  EML YA  D HYLLYI + M   L  L      SD  +  
Sbjct: 384 EITANKEYQNADWRLRPIPDEMLRYAREDTHYLLYIYDTMRINLCSLPKAPESSDTPL-- 441

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            +E  +RS  +C+QL+ K++     E+S L ++    +  +   ++        V  LC 
Sbjct: 442 -VEVYKRSYDVCMQLYEKELLT---ENSYLHIYGLQGAGFNAQQLA-------IVSGLCE 490

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTI 223
           WRD++AR  DES  YVL ++ +  +A Q P T  ++ + +
Sbjct: 491 WRDIVARAEDESTGYVLPNKTVLEIAKQMPVTTNKLRRLV 530


>Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 651

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 13/220 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +PS  KV HGAD DI+WLQRDF IYV N+FDT +A +VL   + SL +LL  +C
Sbjct: 324 LREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMFDTGQASKVLKLERNSLEHLLNHFC 383

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
            +  NK  Q  DWR RP+  EML YA  D HYLLYI + M   L  L      SD  +  
Sbjct: 384 EITANKEYQNADWRLRPIPDEMLRYAREDTHYLLYIYDTMRINLCSLPKAPESSDTPL-- 441

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            +E  +RS  +C+QL+ K++     E+S L ++    +  +   ++        V  LC 
Sbjct: 442 -VEVYKRSYDVCMQLYEKELLT---ENSYLHIYGLQGAGFNAQQLA-------IVSGLCE 490

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTI 223
           WRD++AR  DES  YVL ++ +  +A Q P T  ++ + +
Sbjct: 491 WRDIVARAEDESTGYVLPNKTVLEIAKQMPVTTNKLRRLV 530


>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
           20130731
          Length = 438

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 3/140 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +P+  KV HGAD DI+WLQRDF IY+ N+FDT +A  VL   + SL +LL+ +C
Sbjct: 274 LRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFC 333

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q  DWR RPL   M+ Y   D HYLLYI + M  +L +L  E+   DD +  
Sbjct: 334 GVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPL-- 391

Query: 124 VLEACRRSNMICLQLFTKDI 143
            LE  +RS  +C+QL+ KD+
Sbjct: 392 -LEVYQRSYNVCMQLYEKDL 410