Miyakogusa Predicted Gene

Lj3g3v2905120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2905120.1 Non Characterized Hit- tr|O49369|O49369_ARATH
Putative uncharacterized protein AT4g32210
OS=Arabidop,42.64,2e-18,SUCCINATE DEHYDROGENASE CYTOCHROME B560
SUBUNIT,NULL; seg,NULL; Fumarate reductase respiratory
compl,CUFF.45149.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g048070.1 | succinate dehydrogenase subunit 3 | HC | chr4:...   240   9e-64
Medtr4g048190.1 | cytoplasmic-like aconitate hydratase | HC | ch...    55   6e-08

>Medtr4g048070.1 | succinate dehydrogenase subunit 3 | HC |
           chr4:16983359-16977425 | 20130731
          Length = 245

 Score =  240 bits (612), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 123/206 (59%), Positives = 150/206 (72%), Gaps = 14/206 (6%)

Query: 28  APPQIGATTAT---GGENTSRGNLTGLPKD--------SNDFSSLRFNAYGLDATLLAGA 76
           A  Q   TT T     +N+++G+ +GLP +        +N F+SLR+ A GLD  +LAGA
Sbjct: 40  AAEQFHRTTTTLPYADQNSTKGHFSGLPNNLENKLAGHANQFNSLRYQALGLDTNVLAGA 99

Query: 77  RYGTKACAANGPMQMGV---MARSFQRGAGPEPLGLTSHKRFMSDTSSKTTETKPYGLRP 133
           RYGT+      PM +G+   MAR+ +RG G + LGL  H+RFMSD  SKT+E K  G RP
Sbjct: 100 RYGTQVSGTKSPMLLGLNTLMARNIERGVGADTLGLAGHRRFMSDIPSKTSEAKQSGFRP 159

Query: 134 LSPHLPVYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSK 193
           LSPHLPVYQPQLSSTLSI NRIAGA LAA+ + FYMIYMK+GL+ LT+D FYQFVFYSSK
Sbjct: 160 LSPHLPVYQPQLSSTLSICNRIAGAFLAAVTLLFYMIYMKVGLVGLTFDPFYQFVFYSSK 219

Query: 194 LNLLAIEISALATTYHLYSAIRHLLV 219
           L+LLAIEISALA +YHLYSAIRHL +
Sbjct: 220 LHLLAIEISALAMSYHLYSAIRHLFI 245


>Medtr4g048190.1 | cytoplasmic-like aconitate hydratase | HC |
           chr4:17044934-17035507 | 20130731
          Length = 979

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 24/94 (25%)

Query: 59  SSLRFNAYGLDATLLAGARYGT---KACAANGPMQMGV---MARSFQR------------ 100
           +++R+   G D  +LAGA YG+   +  AA GPM +GV   +A+SF+R            
Sbjct: 841 AAMRYKTSGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 900

Query: 101 ------GAGPEPLGLTSHKRFMSDTSSKTTETKP 128
                 G   + LGLT H+RF  D  SK +E KP
Sbjct: 901 PLCYKPGEDADTLGLTGHERFTIDLPSKISEIKP 934