Miyakogusa Predicted Gene

Lj3g3v2888650.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888650.1 Non Characterized Hit- tr|I1LRS5|I1LRS5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26747
PE,56.19,3e-17,seg,NULL; TraB,Pheromone shutdown, TraB,CUFF.44911.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515...    88   2e-18
Medtr4g046663.1 | TraB family protein | HC | chr4:16444991-16443...    65   2e-11
Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751...    57   4e-09

>Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515053
           | 20130731
          Length = 358

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 66/106 (62%), Gaps = 16/106 (15%)

Query: 1   MPLLHKTKLLCYCLFPP-FLKLSGNFDDLIKIGKMLKHSDRVXXXXXXXXXXXXXHCIQI 59
           MPL +KTKL+   LF   FL  S   DDL  + K +  SD +               IQ 
Sbjct: 217 MPLWYKTKLVYSLLFQAVFLPSS---DDLNNMLKEMDDSDMLTL------------VIQE 261

Query: 60  LSKEFPTAIETLVDERDQYMSSRLLKFASQRRSVVAVVGKGHLEGI 105
           +SKEFPT +ETLV ERDQYMSS LLK AS+ RSVVAVVGKGHL+G+
Sbjct: 262 MSKEFPTLMETLVHERDQYMSSTLLKVASESRSVVAVVGKGHLQGM 307


>Medtr4g046663.1 | TraB family protein | HC | chr4:16444991-16443955
           | 20130731
          Length = 93

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 60  LSKEFPTAIETLVDERDQYMSSRLLKFASQRRSVVAVVGKGHLEGI 105
           +SK  PT +ETLV ERDQYMS  LLK AS+ R+VVAVVG+ HLEG+
Sbjct: 1   MSKTLPTVMETLVHERDQYMSYTLLKGASESRTVVAVVGRMHLEGM 46


>Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751683
           | 20130731
          Length = 307

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 64  FPTAIETLVDERDQYMSSRLLKFASQRRSVVAVVGKGHLEGI 105
           FPT  E +V ERD+YMS  LL  A + R+VVAVVG+GHLEGI
Sbjct: 207 FPTIREAMVHERDRYMSHTLLTVARKSRTVVAVVGEGHLEGI 248