Miyakogusa Predicted Gene

Lj3g3v2888630.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888630.1 tr|A8J251|A8J251_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_191680 PE=4
SV=1,36.77,0.000000000001,seg,NULL,CUFF.44912.1
         (264 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g088850.1 | peroxisome biogenesis-like protein | HC | chr2...   395   e-110
Medtr2g088850.2 | peroxisome biogenesis-like protein | HC | chr2...   395   e-110

>Medtr2g088850.1 | peroxisome biogenesis-like protein | HC |
           chr2:37471318-37466057 | 20130731
          Length = 275

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 221/266 (83%), Gaps = 6/266 (2%)

Query: 5   DSSKEEFLQLIKR----LTLKISNI--IDSHSIGAVAGLAIAIFFTWRLLRSPGEPQPRQ 58
           D+SK +   LIKR    +T KI ++  +D  +IGAVAGLA+AI FTWRLLRSP   Q RQ
Sbjct: 10  DASKLDLFHLIKRFGAFVTFKIGHLFSLDIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQ 69

Query: 59  RKRQTTTSSNPGVSTHSNAXXXXXXXXXXXXXXXAQNVVDELFQPVKPTLGQIVRQKLNE 118
           RKRQ   SSNPG ST+SNA               AQNVVDE FQPVKPTLGQIVRQKL+E
Sbjct: 70  RKRQGGASSNPGASTNSNASVVPSDASLPSDELRAQNVVDEFFQPVKPTLGQIVRQKLSE 129

Query: 119 GRKVTCRLLGVILEETSPEELQKQVTVKSTVLEVLLEITKFCDLYLMERVLDDESEKRVL 178
           GRKVTCRLLGVILEE+SPEELQ + TV+S+VLEVLLEITKFCDLYLM+RVLDDESEKRVL
Sbjct: 130 GRKVTCRLLGVILEESSPEELQTKATVRSSVLEVLLEITKFCDLYLMDRVLDDESEKRVL 189

Query: 179 VALEDAGVFTSGGLVKDKVLFCSTEIGRSSFVRQLEPDWHIDSNPEIISQLARFIKYQLH 238
           VALE+AGVFTSGGLVKDKVLF STE GRSSFVRQLEPDWHID+NPEI++QLARFIKY+LH
Sbjct: 190 VALEEAGVFTSGGLVKDKVLFSSTENGRSSFVRQLEPDWHIDTNPEIVTQLARFIKYELH 249

Query: 239 VSPFRTERTAANVFSAPSLEQFFGST 264
           ++P++TERTAANVFSAPSLE FFGS 
Sbjct: 250 IAPYKTERTAANVFSAPSLELFFGSA 275


>Medtr2g088850.2 | peroxisome biogenesis-like protein | HC |
           chr2:37471302-37460165 | 20130731
          Length = 275

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 221/266 (83%), Gaps = 6/266 (2%)

Query: 5   DSSKEEFLQLIKR----LTLKISNI--IDSHSIGAVAGLAIAIFFTWRLLRSPGEPQPRQ 58
           D+SK +   LIKR    +T KI ++  +D  +IGAVAGLA+AI FTWRLLRSP   Q RQ
Sbjct: 10  DASKLDLFHLIKRFGAFVTFKIGHLFSLDIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQ 69

Query: 59  RKRQTTTSSNPGVSTHSNAXXXXXXXXXXXXXXXAQNVVDELFQPVKPTLGQIVRQKLNE 118
           RKRQ   SSNPG ST+SNA               AQNVVDE FQPVKPTLGQIVRQKL+E
Sbjct: 70  RKRQGGASSNPGASTNSNASVVPSDASLPSDELRAQNVVDEFFQPVKPTLGQIVRQKLSE 129

Query: 119 GRKVTCRLLGVILEETSPEELQKQVTVKSTVLEVLLEITKFCDLYLMERVLDDESEKRVL 178
           GRKVTCRLLGVILEE+SPEELQ + TV+S+VLEVLLEITKFCDLYLM+RVLDDESEKRVL
Sbjct: 130 GRKVTCRLLGVILEESSPEELQTKATVRSSVLEVLLEITKFCDLYLMDRVLDDESEKRVL 189

Query: 179 VALEDAGVFTSGGLVKDKVLFCSTEIGRSSFVRQLEPDWHIDSNPEIISQLARFIKYQLH 238
           VALE+AGVFTSGGLVKDKVLF STE GRSSFVRQLEPDWHID+NPEI++QLARFIKY+LH
Sbjct: 190 VALEEAGVFTSGGLVKDKVLFSSTENGRSSFVRQLEPDWHIDTNPEIVTQLARFIKYELH 249

Query: 239 VSPFRTERTAANVFSAPSLEQFFGST 264
           ++P++TERTAANVFSAPSLE FFGS 
Sbjct: 250 IAPYKTERTAANVFSAPSLELFFGSA 275