Miyakogusa Predicted Gene

Lj3g3v2888310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888310.1 Non Characterized Hit- tr|I1KF92|I1KF92_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40201
PE,55.73,2e-17,seg,NULL,CUFF.44881.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0945s0020.1 | transmembrane protein, putative | HC | scaffo...    74   3e-14

>Medtr0945s0020.1 | transmembrane protein, putative | HC |
           scaffold0945:3196-2858 | 20130731
          Length = 112

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 62/101 (61%), Gaps = 13/101 (12%)

Query: 19  QAMAHESEAQAPLQGLNLNLLEHKTQTSVP----KNDKVXXXXXXXXXXXXXXXRIRRLG 74
           QAM HES+AQ+P        LEHKTQ  V       DKV                IRRLG
Sbjct: 20  QAMTHESKAQSPFP------LEHKTQIGVELHDHNTDKVEDHKVSAESAEAP--NIRRLG 71

Query: 75  IKHHSIDKSEAGGGVIIGGFVTAIFAAVFAYIRVTRKRVSG 115
            KHHS DKS AGGGVIIGGFVTA+FAAVF YIRVTRKR +G
Sbjct: 72  -KHHSTDKSVAGGGVIIGGFVTAVFAAVFCYIRVTRKRDTG 111