Miyakogusa Predicted Gene

Lj3g3v2873600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2873600.1 tr|Q5W745|Q5W745_ORYSJ Os05g0331200 protein
OS=Oryza sativa subsp. japonica GN=OJ1005_D04.1 PE=2
SV=,74.55,2e-19,NADH DEHYDROGENASE-RELATED,NULL; FAD/NAD(P)-binding
domain,NULL; Pyr_redox_2,Pyridine nucleotide-dis,CUFF.44830.1
         (56 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g045993.1 | NAD(P)H dehydrogenase B2 | HC | chr4:16011675-...   122   8e-29
Medtr4g091240.1 | NAD(P)H dehydrogenase B2 | HC | chr4:36124694-...   103   4e-23
Medtr4g091240.2 | NAD(P)H dehydrogenase B2 | HC | chr4:36124694-...   103   4e-23
Medtr2g011730.1 | NAD(P)H dehydrogenase B2 | HC | chr2:2927153-2...   100   3e-22
Medtr4g045997.2 | NAD(P)H dehydrogenase B2 | HC | chr4:16018731-...    79   1e-15
Medtr4g045997.1 | NAD(P)H dehydrogenase B2 | HC | chr4:16018920-...    78   2e-15

>Medtr4g045993.1 | NAD(P)H dehydrogenase B2 | HC |
           chr4:16011675-16007976 | 20130731
          Length = 569

 Score =  122 bits (306), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           MVVWSTGIG RPEIL+FMKQLGQINRRA+VTDEWLRVEGCDNIYALGDCATINQRR
Sbjct: 315 MVVWSTGIGARPEILDFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRR 370


>Medtr4g091240.1 | NAD(P)H dehydrogenase B2 | HC |
           chr4:36124694-36129496 | 20130731
          Length = 578

 Score =  103 bits (257), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 49/56 (87%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M VWSTGIG RP I +FM Q+GQ+NRRAI TDEWLRVEG DN+YALGDCATINQR+
Sbjct: 321 MAVWSTGIGTRPFIKDFMTQIGQVNRRAIATDEWLRVEGTDNVYALGDCATINQRK 376


>Medtr4g091240.2 | NAD(P)H dehydrogenase B2 | HC |
           chr4:36124694-36129496 | 20130731
          Length = 474

 Score =  103 bits (256), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 49/56 (87%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M VWSTGIG RP I +FM Q+GQ+NRRAI TDEWLRVEG DN+YALGDCATINQR+
Sbjct: 217 MAVWSTGIGTRPFIKDFMTQIGQVNRRAIATDEWLRVEGTDNVYALGDCATINQRK 272


>Medtr2g011730.1 | NAD(P)H dehydrogenase B2 | HC |
           chr2:2927153-2921774 | 20130731
          Length = 578

 Score =  100 bits (250), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M VWSTGIG RP I +FM Q+GQ +RRA+ TDEWLRVEGC+N+YALGDCATINQR+
Sbjct: 321 MAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRK 376


>Medtr4g045997.2 | NAD(P)H dehydrogenase B2 | HC |
           chr4:16018731-16013283 | 20130731
          Length = 550

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 45/56 (80%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           +++WSTGI   P I +FM+++GQ  R  + TDEWLRV+ C++++A+GDC++INQR+
Sbjct: 323 LIIWSTGISTLPVIRDFMEEIGQTKRHVLATDEWLRVKECEDVFAIGDCSSINQRK 378


>Medtr4g045997.1 | NAD(P)H dehydrogenase B2 | HC |
           chr4:16018920-16013268 | 20130731
          Length = 577

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 45/56 (80%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           +++WSTGI   P I +FM+++GQ  R  + TDEWLRV+ C++++A+GDC++INQR+
Sbjct: 323 LIIWSTGISTLPVIRDFMEEIGQTKRHVLATDEWLRVKECEDVFAIGDCSSINQRK 378