Miyakogusa Predicted Gene

Lj3g3v2873560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2873560.1 Non Characterized Hit- tr|E5GBC6|E5GBC6_CUCME
Putative uncharacterized protein (Fragment)
OS=Cucumis,43.41,0.000000000000002,seg,NULL,CUFF.44827.1
         (341 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046023.1 | embryo defective 1923 protein, putative | HC |...   328   6e-90

>Medtr4g046023.1 | embryo defective 1923 protein, putative | HC |
           chr4:16055139-16052670 | 20130731
          Length = 330

 Score =  328 bits (840), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 173/328 (52%), Positives = 202/328 (61%), Gaps = 15/328 (4%)

Query: 15  FKPSFHLRRQPFPSTT-RVQSFSPQFIRSLIGFSPKAPSFSLVRRFATNXXXXXXXXXXX 73
           F   F    Q FP+TT + Q F+PQF  +LIGFSPK   F+ V+RFATN           
Sbjct: 17  FSLPFPRHHQQFPTTTTKSQPFNPQFTPNLIGFSPKPFRFAPVKRFATNNDEAE------ 70

Query: 74  XXXXXXXXRGQGTMPERFRYLTKEAXXXXXXXXXXXXXXFLIYAWRAVLFELSNWRNAAF 133
                   +   TMP RF+   K+A              FLIYAWRAVLFELSNW+NAAF
Sbjct: 71  --------KEPSTMPGRFKDYIKQAPESPFKWPMFVALAFLIYAWRAVLFELSNWKNAAF 122

Query: 134 AIVRFIGYVLKYALAVVYRFIGNPITFSIRSFEDSLYAIRAFYSWIINCAPVPDXXXXXX 193
            IVRF+G VLKYA A+VYRFIGNPITF+I S ED +Y ++AFYSWII  APVPD      
Sbjct: 123 GIVRFVGIVLKYAFALVYRFIGNPITFTIGSIEDLIYGVQAFYSWIITSAPVPDLTLVIV 182

Query: 194 XXXXXXXXXXXXXPNCISNQPYVLTVSGLIGYAAVRGYVSEPLFWTLLLGIYGFSKFIKR 253
                        PNCIS+QPYVLTV+GLIGYAAVRG +SEPLFWTLL+GIYGFSKF+KR
Sbjct: 183 LASVVLAVAETINPNCISDQPYVLTVTGLIGYAAVRGVISEPLFWTLLVGIYGFSKFMKR 242

Query: 254 RDDXXXXXXXXXXXXXXGEPWVRVLVIISFMALAIFQYSKTLSEGKEVEEVGTQERXXXX 313
           RDD              GEPWVR +VI+S+ ALAI+Q+SK +SEGKEVEE+    R    
Sbjct: 243 RDDVSSAMPVAAVLAAVGEPWVRFVVIVSYTALAIYQHSKMISEGKEVEEIEPHRRKLPV 302

Query: 314 XXXXXXXXXXXXXXAKWAGYRHLTWMIV 341
                         A WAGYRHLTWM+V
Sbjct: 303 PLFLAALAIGLRVAANWAGYRHLTWMVV 330