Miyakogusa Predicted Gene

Lj3g3v2862520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2862520.1 Non Characterized Hit- tr|C5YHX0|C5YHX0_SORBI
Putative uncharacterized protein Sb07g004920
OS=Sorghu,31.25,2e-17,seg,NULL; coiled-coil,NULL,CUFF.44822.1
         (508 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046037.1 | transmembrane protein, putative | HC | chr4:16...   360   2e-99

>Medtr4g046037.1 | transmembrane protein, putative | HC |
           chr4:16067245-16063952 | 20130731
          Length = 473

 Score =  360 bits (924), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 233/476 (48%), Positives = 291/476 (61%), Gaps = 59/476 (12%)

Query: 1   MGHNKGWHLHSSSGGSTHKGRPYVFIFVIMCGAALLGVMVLHKLRERRIYNLLIKEKDHX 60
           MG+NKG        G + +GRPYV I ++  GAALLGVMVLH+ RE+RIYNLL+ +KDH 
Sbjct: 1   MGYNKG--------GGSQRGRPYVLILLMTFGAALLGVMVLHRFREKRIYNLLVNQKDHQ 52

Query: 61  XXXXXXXXXKERDRTKELRGKNEDMKAKILAVRSQKAELARTIARMQSTMDSLKEEQKVM 120
                    KERDR KEL  KNE+ +AKI  + +QK EL RTIA MQSTM SLK+EQK++
Sbjct: 53  LLTLQVLLQKERDRAKELSRKNEETRAKIYTLSNQKMELTRTIAEMQSTMSSLKDEQKLI 112

Query: 121 ESALEEKQKELREVQAKRSNLGQGYPEIMALRENLKQKEAEITDLKRRLDIPVNTFSEFV 180
           ESA  EKQ ELR +Q + SNLGQG  + ++ RENLK+ EA+I DLK   D P   F + +
Sbjct: 113 ESAYAEKQYELRMMQQRGSNLGQGGTKRISSRENLKKTEADIEDLKSIDDHPA-IFDQIL 171

Query: 181 TSNGTVKAQDKIEIGDKEKDGNSNESARYGGDGKHVTNEDASRSAKTKFKDGAVTAVMKD 240
            +N T +AQ K +  ++EKD NS    +YGG        D S+S  T+FKDG VTA +K+
Sbjct: 172 AANATKEAQSKTKNDNQEKDQNS----KYGG--------DESKSKLTEFKDGEVTAEIKE 219

Query: 241 EIRTEADFGKKTEXXXXXXXXXXXXXXXXXEVVKGREKKAFREEQQGHLQNDKDSGGQDF 300
           EI+T  + GKK +                 E     +KKA  EE Q  L+ + D G QDF
Sbjct: 220 EIKTNEELGKKNDNPADDGASGKEAEAKVVE-----DKKAIIEEHQRKLEVNTDGGRQDF 274

Query: 301 ------NVKRKHGHLSRTKGKRWRTIVNSSLMENNG----NGDVNKGNRKAYRDEKDELK 350
                   KR+HGHLSRT+G RWR IV + LME+NG    +G+VN    K Y+++    K
Sbjct: 275 KAKQLSGAKREHGHLSRTEGARWRNIVKNKLMESNGIFENHGEVNMVKTKVYKED----K 330

Query: 351 DGLAQRDADEEILTREEKNNPRKDKPFTELLKLGNDESKEDGNNTTLETTNLQRVMNNGI 410
           DG  +R+A+ +                  LLK  N+E K DGNNTT++ TN Q   +NGI
Sbjct: 331 DGTVKREAESQ----------------ANLLKPENNEDK-DGNNTTVDKTNHQET-DNGI 372

Query: 411 NAHPEEHEDNLVQQNWSRRHINKASNNTEQTKSNMLH-EETEELEVSREQKQEKDV 465
           N HPEEHED  VQQNWSRR IN ASNN EQTKSNM H EE EELEVS  QKQEKD 
Sbjct: 373 NNHPEEHEDGAVQQNWSRRRINNASNNAEQTKSNMFHEEEPEELEVSDVQKQEKDA 428