Miyakogusa Predicted Gene

Lj3g3v2862510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2862510.1 tr|A9TIQ0|A9TIQ0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146163,46.51,1e-18, ,CUFF.44823.1
         (100 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g065010.1 | oral cancer overexpressed protein | HC | chr4:...   171   1e-43
Medtr4g046043.1 | oral cancer overexpressed protein | HC | chr4:...   166   3e-42

>Medtr4g065010.1 | oral cancer overexpressed protein | HC |
           chr4:24354863-24349513 | 20130731
          Length = 135

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%), Gaps = 2/100 (2%)

Query: 1   MGLKVGFEVGEELGFYSGCLHIWTSAIRLDPNCFSSRAKTTINQMQDLVHKYPLMDPEDL 60
           +GLKVGFEVGEELGFYSGC+HIWTSAI++DP CFSSRAKTTI QMQ+L+ KYPLMDPEDL
Sbjct: 38  VGLKVGFEVGEELGFYSGCIHIWTSAIQIDPTCFSSRAKTTITQMQELIQKYPLMDPEDL 97

Query: 61  QVQAIMDSLRLKFKMLCSSLHVKLDYSVYPNSSEATSIQF 100
           QVQ IMDSLRLKFKMLCSSLHVKL Y+ YP   EA   QF
Sbjct: 98  QVQEIMDSLRLKFKMLCSSLHVKLHYNGYPG--EANVTQF 135


>Medtr4g046043.1 | oral cancer overexpressed protein | HC |
           chr4:16074063-16074473 | 20130731
          Length = 136

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 87/100 (87%), Gaps = 2/100 (2%)

Query: 1   MGLKVGFEVGEELGFYSGCLHIWTSAIRLDPNCFSSRAKTTINQMQDLVHKYPLMDPEDL 60
           +GLK+GFEVGEELGFYSGC+HIWTSAI++DP CFSSRAKT I QM+DL+ KYPLMDPEDL
Sbjct: 39  VGLKIGFEVGEELGFYSGCIHIWTSAIQIDPRCFSSRAKTAIAQMKDLIQKYPLMDPEDL 98

Query: 61  QVQAIMDSLRLKFKMLCSSLHVKLDYSVYPNSSEATSIQF 100
           QVQ IMDSLRLKFKM+CS LHVKL Y+ YP  +EA   QF
Sbjct: 99  QVQEIMDSLRLKFKMICSLLHVKLHYNGYP--AEANDTQF 136