Miyakogusa Predicted Gene

Lj3g3v2861390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2861390.1 Non Characterized Hit- tr|B9RW51|B9RW51_RICCO
Secretory carrier membrane protein, putative
OS=Ricinu,70.45,0.0000001, ,CUFF.44821.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g090115.1 | secretory carrier-associated membrane protein ...    58   3e-09
Medtr4g090510.1 | secretory carrier-associated membrane protein ...    54   7e-08
Medtr4g090510.2 | secretory carrier-associated membrane protein ...    54   7e-08
Medtr4g046110.1 | secretory carrier-associated membrane protein ...    52   2e-07

>Medtr2g090115.1 | secretory carrier-associated membrane protein |
           HC | chr2:38192932-38187550 | 20130731
          Length = 307

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 5/48 (10%)

Query: 71  MSRYDPNPFEHEEVEVNPFAKGAAKG--SGQSSYGGGAFYTTVPIGSV 116
           MS ++ NPF  EEV  NPFA G+ KG  SGQS+YGGGAFYTT P GSV
Sbjct: 3   MSNFETNPFAEEEV--NPFADGSTKGKASGQSNYGGGAFYTTNP-GSV 47


>Medtr4g090510.1 | secretory carrier-associated membrane protein |
           HC | chr4:35885058-35890557 | 20130731
          Length = 311

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 5/49 (10%)

Query: 70  LMSRYDPNPFEHEEVEVNPFAKGAAKG--SGQSSYGGGAFYTTVPIGSV 116
           +  RY+ NPF+ EEV  NPF++ AAKG  S QS+Y GGAFYTT P GSV
Sbjct: 1   MAGRYESNPFDEEEV--NPFSEPAAKGKTSSQSNYSGGAFYTTNP-GSV 46


>Medtr4g090510.2 | secretory carrier-associated membrane protein |
           HC | chr4:35885058-35890557 | 20130731
          Length = 311

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 5/49 (10%)

Query: 70  LMSRYDPNPFEHEEVEVNPFAKGAAKG--SGQSSYGGGAFYTTVPIGSV 116
           +  RY+ NPF+ EEV  NPF++ AAKG  S QS+Y GGAFYTT P GSV
Sbjct: 1   MAGRYESNPFDEEEV--NPFSEPAAKGKTSSQSNYSGGAFYTTNP-GSV 46


>Medtr4g046110.1 | secretory carrier-associated membrane protein |
           HC | chr4:16190569-16182063 | 20130731
          Length = 306

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 39/48 (81%), Gaps = 3/48 (6%)

Query: 71  MSRYDPNPFEHEEVEVNPFAKGAAK--GSGQSSYGGGAFYTTVPIGSV 116
           MSRYDPNPFE EE  VNPFA G AK  GSGQSSYGGGAFYTT P GSV
Sbjct: 1   MSRYDPNPFEEEETHVNPFADGTAKGKGSGQSSYGGGAFYTTNP-GSV 47