Miyakogusa Predicted Gene
- Lj3g3v2838560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2838560.1 Non Characterized Hit- tr|I1M3N4|I1M3N4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37735
PE,75.56,0,TCP,Transcription factor TCP subgroup; seg,NULL;
TCP,Transcription factor, TCP,CUFF.44766.1
(339 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g090960.2 | TCP family transcription factor | HC | chr2:39... 373 e-103
Medtr2g090960.1 | TCP family transcription factor | HC | chr2:39... 373 e-103
Medtr4g079580.1 | TCP family transcription factor | HC | chr4:30... 326 2e-89
Medtr8g463380.1 | TCP family transcription factor | HC | chr8:22... 189 3e-48
Medtr6g015350.1 | TCP family transcription factor | HC | chr6:50... 98 9e-21
Medtr7g015010.1 | TCP family transcription factor | HC | chr7:45... 97 2e-20
Medtr4g109660.1 | TCP family transcription factor | HC | chr4:45... 92 8e-19
Medtr3g026050.1 | TCP family transcription factor | HC | chr3:79... 91 2e-18
Medtr1g103380.1 | TCP family transcription factor | HC | chr1:46... 82 7e-16
Medtr6g017055.1 | TCP family transcription factor | HC | chr6:67... 81 1e-15
Medtr7g018500.1 | TCP family transcription factor | HC | chr7:60... 76 6e-14
Medtr4g111935.1 | TCP family transcription factor | HC | chr4:46... 73 3e-13
>Medtr2g090960.2 | TCP family transcription factor | HC |
chr2:39078457-39076249 | 20130731
Length = 329
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/341 (62%), Positives = 234/341 (68%), Gaps = 50/341 (14%)
Query: 1 MRMKSTXXXXXXXXXXXXXRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
M MKST R+TGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 1 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLG 60
Query: 61 YDRPSKAVDWLIKKAKSAIDKLAELPPWQPPSN-----LEQVQEAEQNAGSSEMGI-AEQ 114
YDRPSKAVDWLIKKAKSAIDKL +LPPW P N E+ ++EM I AEQ
Sbjct: 61 YDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEELQEEENNNNNAVETNEMVIAAEQ 120
Query: 115 SESSGYNFHLQRQLAEDPDXXXXXXXXXXXXSAFIPSSIDNDAIAFFPTTTAASSINFQS 174
SESSGYN LQ+ S FI S+IDNDAIAFFPTT+ S+NFQS
Sbjct: 121 SESSGYN--LQQNNHH-----------NHNHSGFIQSTIDNDAIAFFPTTSVGESMNFQS 167
Query: 175 YPA----------QDLGLSLHSFQDHGLIHAQSQTGGGQTSSDQTLFSGSTPSGFDTNYH 224
Y + QDLGLSLHSFQD+ S+DQTLFSGS P GFD NY+
Sbjct: 168 YSSDIISRTNNSTQDLGLSLHSFQDN------------SASNDQTLFSGSNPVGFDANYN 215
Query: 225 RIVTWNNDSTTTDMNRGGFMVNSPAILGHGTSAYSHRGTLQSSFSPSLRPWNEIPM--AS 282
RIV WN T DMNR GFMVNSPA LG G++ +HRGTLQSSFSPSLRPWN+IP+ AS
Sbjct: 216 RIVNWN----TADMNRTGFMVNSPAFLGQGSTFSAHRGTLQSSFSPSLRPWNDIPIADAS 271
Query: 283 SDNHNHKA---IHQASIFGSRFLSDAIPGFCIPARIQGEDE 320
D+HNHK+ IHQASIFGSRFLSDA+ GFCIPARIQGEDE
Sbjct: 272 VDHHNHKSQQQIHQASIFGSRFLSDALTGFCIPARIQGEDE 312
>Medtr2g090960.1 | TCP family transcription factor | HC |
chr2:39078457-39075847 | 20130731
Length = 329
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/341 (62%), Positives = 234/341 (68%), Gaps = 50/341 (14%)
Query: 1 MRMKSTXXXXXXXXXXXXXRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
M MKST R+TGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 1 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLG 60
Query: 61 YDRPSKAVDWLIKKAKSAIDKLAELPPWQPPSN-----LEQVQEAEQNAGSSEMGI-AEQ 114
YDRPSKAVDWLIKKAKSAIDKL +LPPW P N E+ ++EM I AEQ
Sbjct: 61 YDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEELQEEENNNNNAVETNEMVIAAEQ 120
Query: 115 SESSGYNFHLQRQLAEDPDXXXXXXXXXXXXSAFIPSSIDNDAIAFFPTTTAASSINFQS 174
SESSGYN LQ+ S FI S+IDNDAIAFFPTT+ S+NFQS
Sbjct: 121 SESSGYN--LQQNNHH-----------NHNHSGFIQSTIDNDAIAFFPTTSVGESMNFQS 167
Query: 175 YPA----------QDLGLSLHSFQDHGLIHAQSQTGGGQTSSDQTLFSGSTPSGFDTNYH 224
Y + QDLGLSLHSFQD+ S+DQTLFSGS P GFD NY+
Sbjct: 168 YSSDIISRTNNSTQDLGLSLHSFQDN------------SASNDQTLFSGSNPVGFDANYN 215
Query: 225 RIVTWNNDSTTTDMNRGGFMVNSPAILGHGTSAYSHRGTLQSSFSPSLRPWNEIPM--AS 282
RIV WN T DMNR GFMVNSPA LG G++ +HRGTLQSSFSPSLRPWN+IP+ AS
Sbjct: 216 RIVNWN----TADMNRTGFMVNSPAFLGQGSTFSAHRGTLQSSFSPSLRPWNDIPIADAS 271
Query: 283 SDNHNHKA---IHQASIFGSRFLSDAIPGFCIPARIQGEDE 320
D+HNHK+ IHQASIFGSRFLSDA+ GFCIPARIQGEDE
Sbjct: 272 VDHHNHKSQQQIHQASIFGSRFLSDALTGFCIPARIQGEDE 312
>Medtr4g079580.1 | TCP family transcription factor | HC |
chr4:30768533-30767465 | 20130731
Length = 335
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 230/338 (68%), Gaps = 39/338 (11%)
Query: 3 MKSTXXXXXXXXXXXXXRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYD 62
M+ST R+TG+KDRHSKVYTSKGPRDRRVRLSAHTAI+FYDVQDRLGYD
Sbjct: 1 MRSTGGEIVQVEGGHIVRATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYD 60
Query: 63 RPSKAVDWLIKKAKSAIDKLAELPPWQPPSN------LEQVQEAEQNAGSSEMGIAEQSE 116
RPSKAVDWLIKKAKS+IDKLAELPPW P S LE+VQ A SS M + E SE
Sbjct: 61 RPSKAVDWLIKKAKSSIDKLAELPPWHPISENQTLKPLEEVQNVV--ANSSGMVVGETSE 118
Query: 117 SSGYNFHLQRQLAEDPDXXXXXXXXXXXXSAFI-PSSIDNDAIAFFP-TTTAASSINFQS 174
S+GY+FHL RQL+E+ SAFI P +++ D I FFP T++ +SSINFQ+
Sbjct: 119 SNGYSFHLLRQLSEN---------QGNHNSAFISPHNVETDPIPFFPTTSSTSSSINFQN 169
Query: 175 YPAQDLGLSLHSFQDH-GLIHAQSQ-------TGGGQTSSDQTLFSGSTPSGFDTNYHRI 226
YP+++LGLSLHSFQDH G I QSQ T + +QT F+ YHRI
Sbjct: 170 YPSENLGLSLHSFQDHNGFIPWQSQQVCENHETSNENQNQNQTF--------FENQYHRI 221
Query: 227 VTWNNDSTTTDMNRGGFMVNSPAILGHGT-SAYSHRGTLQSSFSPSLRPWNEIPM-ASSD 284
WNN++T + + GFMVNS + LG G+ S YS TLQS+FS S+R WNEIPM +SS+
Sbjct: 222 ENWNNETTNDYIKKVGFMVNSQSFLGQGSGSEYSPNETLQSNFSHSVRTWNEIPMDSSSE 281
Query: 285 NHNHKA--IHQASIFGSRFLSDAIPGFCIPARIQGEDE 320
H+H++ +HQASIFGSRF+SD + GFCIP +QG +E
Sbjct: 282 VHHHRSQQVHQASIFGSRFVSDGLAGFCIPDTVQGGEE 319
>Medtr8g463380.1 | TCP family transcription factor | HC |
chr8:22326723-22329800 | 20130731
Length = 433
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 188/373 (50%), Gaps = 78/373 (20%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
RSTGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI
Sbjct: 50 RSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 109
Query: 80 DKLAELPPWQPPSNLEQVQEAEQNAGSSEMGIAEQS---------ESSGYNFHLQRQL-- 128
D+LA LP W P + + +Q ++EM QS +S + L+R++
Sbjct: 110 DELAHLPAWNPTATCSSTPQQQQQQQTNEM-FHRQSPVDNNPVTASTSHRSAALERRMPP 168
Query: 129 ------AEDPDXXXXXXXXXXXXSAFIPSSIDNDAI----AFFPTTTAASSI-NFQSYP- 176
++ F+ S+D D +FFP T +S N+Q P
Sbjct: 169 HEQQFPSQQQQLEIDYNSSSSGKHGFLQGSLDTDIADTIKSFFPVETPTTSFHNYQQPPD 228
Query: 177 ----------AQDLGLSLHSFQDHGLIHAQSQTGGGQTSSD-QTLFSGSTPSGFDTNYHR 225
QDL LSL SFQD ++ + +++ Q LF+G++ G+D
Sbjct: 229 LLSRTAATTQQQDLRLSLQSFQDPIMLQSHHDNHHHHHNNNNQVLFAGNSSLGYDGGGSG 288
Query: 226 IVTWNNDSTTTD---------MNR----------------------GGFMVNSPA-ILGH 253
W+ +NR GF+ ++PA G
Sbjct: 289 STLWSEQQQQQQHQEEHDNGRLNRMMAWNANNINANAADGGNSGHGAGFVFSTPAPAFGG 348
Query: 254 GTSAYSHRGTLQSSFSPSLRPWNEIPMASS---DNHNH---KAIHQASIFGSRFLSDAIP 307
++ RG LQSS++PS+R W + MA++ D+H+H IHQAS+ G F
Sbjct: 349 YGQFFTQRGPLQSSYNPSVRAWIDPSMATANIVDHHHHYLSPMIHQASVSGGGF-----S 403
Query: 308 GFCIPARIQGEDE 320
GF IPARIQGE+E
Sbjct: 404 GFRIPARIQGEEE 416
>Medtr6g015350.1 | TCP family transcription factor | HC |
chr6:5010976-5013085 | 20130731
Length = 333
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
R+ G KDRHSKVYT KG RDRRVRLS TAI YD+QDRLG ++PSK VDWL+ AK I
Sbjct: 45 RAFGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEI 104
Query: 80 DKLAELPPWQPP 91
D ELPP Q P
Sbjct: 105 D---ELPPLQIP 113
>Medtr7g015010.1 | TCP family transcription factor | HC |
chr7:4515349-4517203 | 20130731
Length = 351
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 53/71 (74%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
R+ G KDRHSKV T +G RDRRVRLS TAIQ YD+QDRLG ++PSK VDWL+ AK I
Sbjct: 53 RAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQDI 112
Query: 80 DKLAELPPWQP 90
D+L LP + P
Sbjct: 113 DQLPPLPNFSP 123
>Medtr4g109660.1 | TCP family transcription factor | HC |
chr4:45588798-45589718 | 20130731
Length = 306
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
RS G KDRHSKV T +G RDRR+RLS TAIQ YD+QDRLG +PSK V+WLI+ +S I
Sbjct: 52 RSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDI 111
Query: 80 DKLAEL 85
DKL L
Sbjct: 112 DKLPPL 117
>Medtr3g026050.1 | TCP family transcription factor | HC |
chr3:7969037-7970349 | 20130731
Length = 385
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
R+ G KDRHSKV T +G RDRR+RLS TAIQ YD+QD+LG +PSK +DWL++ K I
Sbjct: 53 RTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDI 112
Query: 80 DKLAELPPWQPPSNLEQ 96
DK LPP Q P + Q
Sbjct: 113 DK---LPPLQFPQSFSQ 126
>Medtr1g103380.1 | TCP family transcription factor | HC |
chr1:46797920-46794627 | 20130731
Length = 489
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 49/61 (80%)
Query: 23 GRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKL 82
G+KDRHSK++TS+G RDRRVRLS+ A +F+D+QD L +D+PS ++WL K+ +AI +L
Sbjct: 200 GKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKEL 259
Query: 83 A 83
A
Sbjct: 260 A 260
>Medtr6g017055.1 | TCP family transcription factor | HC |
chr6:6710788-6713192 | 20130731
Length = 409
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 24 RKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLA 83
+KDRHSK+YTS+G RDRRVRLS A +F+D+QD LG+D+ S +DWL K+K AI L
Sbjct: 126 KKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLT 185
Query: 84 E 84
+
Sbjct: 186 K 186
>Medtr7g018500.1 | TCP family transcription factor | HC |
chr7:6031315-6033168 | 20130731
Length = 374
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 26 DRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLA 83
DRHSK++TS+G RDRRVRLS A +F+D+QD LG+D+ S ++WL K+K AI++L
Sbjct: 122 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELT 179
>Medtr4g111935.1 | TCP family transcription factor | HC |
chr4:46280786-46279251 | 20130731
Length = 388
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 20 RSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 79
+ + ++DRHSK+ T+KG RDRR+RLS A +F+ +QD LG+++ SK VDWL+ ++K I
Sbjct: 128 KRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEI 187
Query: 80 DKLA 83
LA
Sbjct: 188 KLLA 191