Miyakogusa Predicted Gene

Lj3g3v2809750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2809750.1 Non Characterized Hit- tr|Q9FLS3|Q9FLS3_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,57.14,9e-19,MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF
SIGNALING MOLECULE,Protein Transporter, Pam16; Pa,CUFF.44696.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g037640.1 | import inner membrane translocase subunit tim1...   129   5e-31
Medtr4g116100.1 | import inner membrane translocase subunit tim1...    94   2e-20
Medtr1g098440.1 | import inner membrane translocase subunit tim1...    58   2e-09

>Medtr6g037640.1 | import inner membrane translocase subunit
          tim16-like protein | HC | chr6:13430117-13424255 |
          20130731
          Length = 115

 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 79/96 (82%), Gaps = 2/96 (2%)

Query: 1  MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQ 60
          MA +ILANLIVMGGG+ A+AVV+AY +AL  A +NGVAQET+QNT+R A+  +TEQEARQ
Sbjct: 1  MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRKAK--ITEQEARQ 58

Query: 61 ILGVTEGTPWGEILQKYDNLFEKNSEKGSFYLQSKV 96
          ILGVTE   W EI +KY+ +FE N++ GSFYLQSK+
Sbjct: 59 ILGVTEEMSWEEITKKYEKMFENNAKSGSFYLQSKI 94


>Medtr4g116100.1 | import inner membrane translocase subunit
          tim16, putative | HC | chr4:48008657-48009613 |
          20130731
          Length = 186

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%)

Query: 1  MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQ 60
          MA +ILANLIV+GG + A+ VV AY +AL  A +NGVAQET+QN V    KMMT +EA+ 
Sbjct: 1  MAAKILANLIVIGGSILARGVVAAYRQALQNATKNGVAQETIQNVVHRGSKMMTVEEAQL 60

Query: 61 ILGVTEGTPWGEILQKYDNLFEK 83
          ILGVTE T W +I++K++ +  K
Sbjct: 61 ILGVTEKTFWEDIVKKFETMHYK 83


>Medtr1g098440.1 | import inner membrane translocase subunit
          tim16-like protein | HC | chr1:44321785-44322033 |
          20130731
          Length = 54

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%), Gaps = 2/45 (4%)

Query: 52 MMTEQEARQILGVTEGTPWGEILQKYDNLFEKNSEKGSFYLQSKV 96
          MMT +EAR ILGVTE T W +I++K++ +FEKN++  SFYLQSK+
Sbjct: 1  MMTGEEARLILGVTEKTSWEDIVKKFETMFEKNTK--SFYLQSKI 43