Miyakogusa Predicted Gene

Lj3g3v2809230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2809230.1 Non Characterized Hit- tr|D5A892|D5A892_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,43.93,2e-18,seg,NULL; DUF1421,Protein of unknown function DUF1421;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NU,CUFF.44731.1
         (337 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g090360.1 | structural constituent of cell wall protein, p...   337   7e-93
Medtr0004s0130.1 | structural constituent of cell wall protein, ...   330   2e-90
Medtr2g090360.2 | structural constituent of cell wall protein, p...   295   3e-80
Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain prot...    87   2e-17
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063...    78   1e-14

>Medtr2g090360.1 | structural constituent of cell wall protein,
           putative | LC | chr2:38464803-38468087 | 20130731
          Length = 500

 Score =  337 bits (865), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 185/284 (65%), Positives = 215/284 (75%), Gaps = 9/284 (3%)

Query: 1   MASGPSGLSNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPSKDFHISRMTKAAALPA 60
           MAS PS L N +S+G     DD+ CSY+D+T +DSS G +ID +KDFHISRM K +  PA
Sbjct: 1   MASEPSFLRNYNSEG---HKDDIFCSYDDYTNEDSSCGTHIDSNKDFHISRMVKTSTFPA 57

Query: 61  TAYGSPEGSLGQDVIAT-VEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMRS 119
           TAY SPE SL Q+VIAT VEKS+KT +D+LMRFLEGI SRLSQLELYCYN+DKSIGE++S
Sbjct: 58  TAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKS 117

Query: 120 DLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQK-ESSPSRRQ 178
           +L SDHEEADSKLKS++KH+QEVHRSVQIL+DKQEL + QKELAKLQL +K   S S  Q
Sbjct: 118 ELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQKELAKLQLARKGSPSSSHSQ 177

Query: 179 SYEGRSSPSATDQKRTDNA----SDTNNQQLALALPHQVAFQHQPVTAPSQAPASNVTQA 234
           S E R SPSA DQK TDNA     D +NQQLAL L +QVAFQ QP+   SQA + NVT+ 
Sbjct: 178 SNEERFSPSAIDQKGTDNAYVTSYDPHNQQLALTLSNQVAFQQQPIAPSSQASSPNVTET 237

Query: 235 TQQLSYYMLPASLPNPPAMTHFPQNQYLSSDPRYQNPQPTSSQV 278
           TQQ  YY LP S PNPPA    PQNQY SS+P+YQ    T SQV
Sbjct: 238 TQQPRYYTLPTSSPNPPAAAQLPQNQYFSSNPQYQYHPSTLSQV 281


>Medtr0004s0130.1 | structural constituent of cell wall protein,
           putative | HC | scaffold0004:37626-31693 | 20130731
          Length = 527

 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 213/293 (72%), Gaps = 23/293 (7%)

Query: 1   MASGPSGLSNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPS---KDFHISRMTKAAA 57
           MASG SG  N    GFDF SDD+LCSYEDF+ +DS++ N+ DPS   KDFH SR+ + + 
Sbjct: 1   MASGSSGRGN---PGFDFASDDILCSYEDFSNRDSNSNNHNDPSNSTKDFHKSRVARTSV 57

Query: 58  LPATAYGSPEGSLGQDVIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEM 117
            PA AY  PE SL QDVIATVEKS+K Y+DNLMRFLEGI SRLSQLELYCYNLDKSIGE+
Sbjct: 58  FPAPAYNPPEDSLSQDVIATVEKSMKKYADNLMRFLEGISSRLSQLELYCYNLDKSIGEI 117

Query: 118 RSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQKESSPSRR 177
           RSDLN DH + DSKLKS+EKHVQEVHRSVQIL+DKQELA+ QKELAKLQL QKESS S  
Sbjct: 118 RSDLNRDHGDQDSKLKSLEKHVQEVHRSVQILRDKQELAETQKELAKLQLAQKESSSSSH 177

Query: 178 QSY-EGRSSPSATDQKRTDNASDTNNQQLALALPHQV-AFQHQPVTAPSQAPASNVTQAT 235
               E +SSPS TD K+ DNASDTNNQQLALALPHQ+          P+QAP  NV Q T
Sbjct: 178 SQSNEDKSSPSTTDPKKADNASDTNNQQLALALPHQIAPQPQPAGPPPAQAPPPNVNQPT 237

Query: 236 QQLSYYMLPASLPNPPAMTHFPQNQYLSSDPRYQNP----------QPTSSQV 278
           QQ SYYM PA     PA +  PQNQY+ SD +Y+ P          QPT SQ+
Sbjct: 238 QQPSYYMPPA-----PAASQLPQNQYMPSDQQYRTPQLQDMSRVAQQPTPSQI 285


>Medtr2g090360.2 | structural constituent of cell wall protein,
           putative | LC | chr2:38466128-38468084 | 20130731
          Length = 480

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/240 (66%), Positives = 183/240 (76%), Gaps = 6/240 (2%)

Query: 45  KDFHISRMTKAAALPATAYGSPEGSLGQDVIAT-VEKSIKTYSDNLMRFLEGIGSRLSQL 103
           +DFHISRM K +  PATAY SPE SL Q+VIAT VEKS+KT +D+LMRFLEGI SRLSQL
Sbjct: 22  QDFHISRMVKTSTFPATAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRLSQL 81

Query: 104 ELYCYNLDKSIGEMRSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELA 163
           ELYCYN+DKSIGE++S+L SDHEEADSKLKS++KH+QEVHRSVQIL+DKQEL + QKELA
Sbjct: 82  ELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQKELA 141

Query: 164 KLQLVQKESSPSRRQSY-EGRSSPSATDQKRTDNA----SDTNNQQLALALPHQVAFQHQ 218
           KLQL +K S  S      E R SPSA DQK TDNA     D +NQQLAL L +QVAFQ Q
Sbjct: 142 KLQLARKGSPSSSHSQSNEERFSPSAIDQKGTDNAYVTSYDPHNQQLALTLSNQVAFQQQ 201

Query: 219 PVTAPSQAPASNVTQATQQLSYYMLPASLPNPPAMTHFPQNQYLSSDPRYQNPQPTSSQV 278
           P+   SQA + NVT+ TQQ  YY LP S PNPPA    PQNQY SS+P+YQ    T SQV
Sbjct: 202 PIAPSSQASSPNVTETTQQPRYYTLPTSSPNPPAAAQLPQNQYFSSNPQYQYHPSTLSQV 261


>Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain
          protein, putative | HC | chr2:38471494-38475361 |
          20130731
          Length = 453

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 2/73 (2%)

Query: 24 LCSYED-FTEQDSSNGNNIDPSKDFHISRMTKAAALPATAYGSPEGSLGQDVIAT-VEKS 81
           CSY+D FT +D S+  +ID SKDF+IS++ K + +PATAY SPE SL QDVIAT VEKS
Sbjct: 13 FCSYDDAFTNEDFSSVTHIDYSKDFNISKIAKTSIVPATAYNSPEVSLSQDVIATIVEKS 72

Query: 82 IKTYSDNLMRFLE 94
          +KT +DNLM+FL+
Sbjct: 73 MKTCTDNLMQFLD 85


>Medtr6g004930.1 | DNA-binding protein, putative | HC |
           chr6:506365-512095 | 20130731
          Length = 565

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 6/180 (3%)

Query: 74  VIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMRSDLNSDHEEADSKLK 133
           ++  +++++K + DNL   LEG+ +RL+Q+E   ++L+ S+ +++  + ++H   D KL+
Sbjct: 126 ILLEIDRTMKKHMDNLHHVLEGVSARLTQVETRTHHLESSMDDLKVSVGNNHGITDGKLR 185

Query: 134 SIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQKESSPSRRQSYEGRSSPSATDQKR 193
            +E  + EV   V  +KDKQ++  AQ +LAKLQ+ +     S  Q+   R++  A  Q  
Sbjct: 186 LLENILSEVQTGVHDIKDKQDIMQAQLQLAKLQVSKTTEQQSETQT---RATSDAVQQTS 242

Query: 194 TDNASDTNNQQLALALPHQVAFQHQPVTAPSQAPASNVTQATQQL--SYYMLPASLPNPP 251
           + +AS     Q  L   + +  Q  PV +P  AP         QL   Y  +P   P  P
Sbjct: 243 SVSASAPLQTQHYLPSSYNLP-QSIPVVSPPNAPPQQSLPPPAQLPNQYSQIPTPTPTVP 301