Miyakogusa Predicted Gene
- Lj3g3v2809210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2809210.1 tr|F2E1F5|F2E1F5_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,36.25,4e-18,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; DUF1421,Protein of
unknown function DUF14,CUFF.44732.1
(281 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0004s0130.1 | structural constituent of cell wall protein, ... 241 4e-64
Medtr2g090360.1 | structural constituent of cell wall protein, p... 203 1e-52
Medtr2g090360.2 | structural constituent of cell wall protein, p... 202 2e-52
Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain prot... 68 9e-12
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063... 56 3e-08
>Medtr0004s0130.1 | structural constituent of cell wall protein,
putative | HC | scaffold0004:37626-31693 | 20130731
Length = 527
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 153/195 (78%), Gaps = 11/195 (5%)
Query: 93 QAANPPPKETLPNSLPMQMQYSGIPPSGSGRGAATPYGYNGTGRSTVAQQPPPQQIKSSF 152
QA+NP P ETLPNS+PMQM YSG+P GS R + YGY GTGR TV QQPPPQQIK SF
Sbjct: 336 QASNPSPTETLPNSMPMQMPYSGVPQPGSSRADSMQYGYGGTGR-TVPQQPPPQQIKGSF 394
Query: 153 PAQPGDMYGTHAT-----PPPASSYMTYDS-DGGRAHYTAQHSSHYAQAGYPPTSASLQN 206
P+QPGD+YG T PPP ++YM YD +GGRAH+ SH+AQ+GYP TSASL N
Sbjct: 395 PSQPGDVYGASGTHPALPPPPGNAYMMYDGGEGGRAHHPPPQPSHFAQSGYPQTSASLTN 454
Query: 207 PAPHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLL 266
P NL+VRNPSQ QF R+HPYN+LIEKLVNMGFRGDHV SVIQRMEE+GQ +DFNS+L
Sbjct: 455 P---NLLVRNPSQS-QFVRNHPYNELIEKLVNMGFRGDHVASVIQRMEESGQTIDFNSVL 510
Query: 267 DRLNVLSSVGPQRGW 281
DRLNV SSVGPQRGW
Sbjct: 511 DRLNVHSSVGPQRGW 525
>Medtr2g090360.1 | structural constituent of cell wall protein,
putative | LC | chr2:38464803-38468087 | 20130731
Length = 500
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 156/283 (55%), Gaps = 33/283 (11%)
Query: 2 LPASLPNPPAMTHFPQNQYLSSDPRYQNPQPTSSQVTMXXXXXXXXXXXXXXXXXXXXXX 61
LP S PNPPA PQNQY SS+P+YQ T SQV
Sbjct: 246 LPTSSPNPPAAAQLPQNQYFSSNPQYQYHPSTLSQVIQSSTVQQFSQYQQPQQKQQWSQP 305
Query: 62 XXXEVAPPQPPSMQFQMRXXXXXXXXXXXXXQAANPPPKETLPNSLPMQMQYSGIPPSGS 121
+V P QPP M QMR QA + PP +T NS+PMQ YSG PP
Sbjct: 306 LPQQVQPMQPPLMHSQMRPPSVNAYAPYLTSQATSLPPTDTFSNSMPMQKPYSGTPP--- 362
Query: 122 GRGAATPYGYNGTGRSTVAQQPPPQQIKSSFPAQPGDMYGT---HATPPPASSYMTYDSD 178
Q + P G++YGT HATPPPAS Y+ + +
Sbjct: 363 -------------------------QTRGHHPTHQGNLYGTSGVHATPPPASVYVMNEGE 397
Query: 179 GGRAHYTAQHSSHYAQAGYPPTSASLQNPAPHNLMVRNPSQPPQFTRSHPYNDLIEKLVN 238
GGRA Y Q S +AQ GYPP +ASLQNPAPHN+ +RNPSQ + RSHPYN+LIE LV+
Sbjct: 398 GGRASYPPQPSP-FAQGGYPPQNASLQNPAPHNVTIRNPSQQ-KLMRSHPYNELIENLVS 455
Query: 239 MGFRGDHVGSVIQRMEETGQPVDFNSLLDRLNVLSSVGPQRGW 281
MG RGD V S+IQRMEETGQPV+FNS+LDRLN SS+GPQR W
Sbjct: 456 MGVRGDLVVSIIQRMEETGQPVNFNSVLDRLNAHSSLGPQREW 498
>Medtr2g090360.2 | structural constituent of cell wall protein,
putative | LC | chr2:38466128-38468084 | 20130731
Length = 480
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 156/283 (55%), Gaps = 33/283 (11%)
Query: 2 LPASLPNPPAMTHFPQNQYLSSDPRYQNPQPTSSQVTMXXXXXXXXXXXXXXXXXXXXXX 61
LP S PNPPA PQNQY SS+P+YQ T SQV
Sbjct: 226 LPTSSPNPPAAAQLPQNQYFSSNPQYQYHPSTLSQVIQSSTVQQFSQYQQPQQKQQWSQP 285
Query: 62 XXXEVAPPQPPSMQFQMRXXXXXXXXXXXXXQAANPPPKETLPNSLPMQMQYSGIPPSGS 121
+V P QPP M QMR QA + PP +T NS+PMQ YSG PP
Sbjct: 286 LPQQVQPMQPPLMHSQMRPPSVNAYAPYLTSQATSLPPTDTFSNSMPMQKPYSGTPP--- 342
Query: 122 GRGAATPYGYNGTGRSTVAQQPPPQQIKSSFPAQPGDMYGT---HATPPPASSYMTYDSD 178
Q + P G++YGT HATPPPAS Y+ + +
Sbjct: 343 -------------------------QTRGHHPTHQGNLYGTSGVHATPPPASVYVMNEGE 377
Query: 179 GGRAHYTAQHSSHYAQAGYPPTSASLQNPAPHNLMVRNPSQPPQFTRSHPYNDLIEKLVN 238
GGRA Y Q S +AQ GYPP +ASLQNPAPHN+ +RNPSQ + RSHPYN+LIE LV+
Sbjct: 378 GGRASYPPQPSP-FAQGGYPPQNASLQNPAPHNVTIRNPSQQ-KLMRSHPYNELIENLVS 435
Query: 239 MGFRGDHVGSVIQRMEETGQPVDFNSLLDRLNVLSSVGPQRGW 281
MG RGD V S+IQRMEETGQPV+FNS+LDRLN SS+GPQR W
Sbjct: 436 MGVRGDLVVSIIQRMEETGQPVNFNSVLDRLNAHSSLGPQREW 478
>Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain
protein, putative | HC | chr2:38471494-38475361 |
20130731
Length = 453
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 190 SHYAQAGYPPTSASLQNPAPHNLMVRNPSQPPQFTRSHPYNDLI 233
S +AQ GYPP SASLQNPAPHNL VRNPS+ Q RSHPYN+LI
Sbjct: 201 SQFAQGGYPPQSASLQNPAPHNLTVRNPSE-LQLMRSHPYNELI 243
>Medtr6g004930.1 | DNA-binding protein, putative | HC |
chr6:506365-512095 | 20130731
Length = 565
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 228 PYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDRLNVLSSVGP---QRGW 281
P +D++EK+ MGF DHV + ++++ E GQ VD N++LD+L G QRGW
Sbjct: 506 PVDDIVEKVATMGFPRDHVRATVRKLTENGQAVDLNTVLDKLMNEGGGGDMQQQRGW 562