Miyakogusa Predicted Gene

Lj3g3v2785700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2785700.1 Non Characterized Hit- tr|E1ZQ67|E1ZQ67_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,41.35,3e-17,seg,NULL; PSII_Pbs27,Photosystem II
Pbs27,CUFF.44639.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g090200.1 | photosystem II Pbs27 protein | HC | chr2:38278...   203   5e-53

>Medtr2g090200.1 | photosystem II Pbs27 protein | HC |
           chr2:38278125-38278915 | 20130731
          Length = 170

 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 120/170 (70%), Gaps = 19/170 (11%)

Query: 1   MASPTLITPTSTPKSLPPIKPR---------PTTAI----------AASFLSGTWLCHVT 41
           MASPTLITPTSTPKSLPPIK +         PTT I          +A+ L+ T+L HVT
Sbjct: 1   MASPTLITPTSTPKSLPPIKTKLTTISSTLTPTTTIPSRRREFLSTSATILTTTFLAHVT 60

Query: 42  PALAAXXXXXXXXXXXVINKVRTTITMDKNDPNVADAVADLRDSSNSWVAKYRKEKALLA 101
           PALAA           VI+KVRTTIT+DKNDPNVA AVA+LRD+SNSWVAKYR+EKALLA
Sbjct: 61  PALAASDEEYVKETEEVISKVRTTITLDKNDPNVATAVAELRDTSNSWVAKYRREKALLA 120

Query: 102 RVSFRDVYSALNAVSGHYISFGPTAPIPAKRRARIXXXXXXXXXXXXRGR 151
           R SFRD+YSALNAVSGHYISFGPTAPIPAKRR RI            RGR
Sbjct: 121 RASFRDMYSALNAVSGHYISFGPTAPIPAKRRVRILEEIEVAEKSLKRGR 170