Miyakogusa Predicted Gene

Lj3g3v2780540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2780540.1 Non Characterized Hit- tr|I1LWZ0|I1LWZ0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53257 PE,88.12,0,no
description,NULL; Tryptophan synthase beta subunit-like PLP-dependent
enzymes,Tryptophan synthase,CUFF.44620.1
         (373 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016665.1 | tryptophan synthase beta chain | HC | chr6:637...   634   0.0  
Medtr3g049410.1 | tryptophan synthase beta type 2 | HC | chr3:18...   100   2e-21
Medtr3g051120.1 | tryptophan synthase beta type 2 | HC | chr3:20...    97   2e-20
Medtr5g005670.1 | tryptophan synthase beta type 2 | HC | chr5:56...    72   7e-13

>Medtr6g016665.1 | tryptophan synthase beta chain | HC |
           chr6:6372084-6376544 | 20130731
          Length = 501

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/361 (83%), Positives = 319/361 (88%), Gaps = 1/361 (0%)

Query: 1   MMIADTASSVSSLRTTSPYCFYSKVEKQWPQRFALSVKPKHLRLSNACKVRATLDSNRSI 60
           M      S V SL  +SPY F  +VEKQWPQRF+LS KP HLR SN CKVRATLD+N+SI
Sbjct: 1   MKSVSNISCVFSLPNSSPY-FNFQVEKQWPQRFSLSTKPMHLRYSNGCKVRATLDTNKSI 59

Query: 61  DIPKQWYNLIADXXXXXXXXXXXXXXXXXKPEDLAPLFPDELIRQEVTSDRFIDIPDEVL 120
           +IP QWYNLIAD                 KPEDL+PLFPDELIRQEVT+DRFIDIPDEV 
Sbjct: 60  EIPHQWYNLIADLPIKPPPPLHPKTFEPIKPEDLSPLFPDELIRQEVTTDRFIDIPDEVR 119

Query: 121 DVYKLWRPTPLIRAKRLEKLLDTPARIYYKYEGVSPAGSHKPNSAVPQAWYNLQEGIKNV 180
           DVY LWRPTPLIRAKRLEKLLDTPARIYYKYEGVSPAGSHKPNSA+PQAWYNLQEG+KNV
Sbjct: 120 DVYSLWRPTPLIRAKRLEKLLDTPARIYYKYEGVSPAGSHKPNSAIPQAWYNLQEGVKNV 179

Query: 181 VTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGAKVHPSPSMITES 240
           VTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGA VHPSPSM+TE+
Sbjct: 180 VTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGANVHPSPSMLTEA 239

Query: 241 GQRILQEDPSSPGSLGIAISEAVEVAAKNPDTKYCLGSVLNHVLLHQSVIGEECLKQMEA 300
           GQRILQ DP+SPGSLGIAISEAVE+AAKNPDTKYCLGSVLNHVLLHQSVIGEEC+KQMEA
Sbjct: 240 GQRILQNDPTSPGSLGIAISEAVEIAAKNPDTKYCLGSVLNHVLLHQSVIGEECIKQMEA 299

Query: 301 IGETPDVIIGCTGGGSNFAGLSFPFIREKLNKKINPVIRAVEPAACPSLTKGVYAYDYGD 360
           IGETPDVIIGCTGGGSNFAGLSFPFIREKLN KINPVIRAVEP ACPSLTKG+Y YDYGD
Sbjct: 300 IGETPDVIIGCTGGGSNFAGLSFPFIREKLNNKINPVIRAVEPTACPSLTKGIYTYDYGD 359

Query: 361 T 361
           T
Sbjct: 360 T 360


>Medtr3g049410.1 | tryptophan synthase beta type 2 | HC |
           chr3:18406693-18402343 | 20130731
          Length = 466

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 107/227 (47%), Gaps = 29/227 (12%)

Query: 114 DIPDEVLDVYK--LWRPTPLIRAKRLEKLLDTPA----RIYYKYEGVSPAGSHKPNSAVP 167
           D   E+  + K  + R TPL  A+RL +           IY K E ++  G+HK N+AV 
Sbjct: 108 DFQKELAGILKDYVGRETPLYFAERLTEHYKNANGEGPHIYLKREDLNHTGAHKINNAVA 167

Query: 168 QAWYNLQEGIKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWG 227
           QA    + G K ++ ETGAGQ G A A  C+ FGL C ++      + +      M+  G
Sbjct: 168 QALLAKKLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLG 227

Query: 228 AKVHPSPSMITESGQRILQEDPSSPGSLGIAISEAVEVAAKNPD-TKYCLGSVLN----- 281
           A+V P       +G   L++          A SEA+     N + T Y LGSV       
Sbjct: 228 AEVRP-----VHAGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYP 272

Query: 282 -HVLLHQSVIGEECLKQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFI 326
             V    +VIG+E  KQ +E  G  PD++I C GGGSN  GL   F+
Sbjct: 273 MMVREFHAVIGKETRKQALEKWGGKPDILIACVGGGSNAMGLFHEFV 319


>Medtr3g051120.1 | tryptophan synthase beta type 2 | HC |
           chr3:20169884-20174798 | 20130731
          Length = 412

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 108/230 (46%), Gaps = 29/230 (12%)

Query: 114 DIPDEVLDVYK--LWRPTPLIRAKRLEKLLDTPA----RIYYKYEGVSPAGSHKPNSAVP 167
           D   E+  V K  + R +PL  A+RL +           +Y K E ++  G+HK N+AV 
Sbjct: 54  DFQKELAGVLKDYVGRESPLYFAERLTEHYKRGNGEGPHVYLKREDLNHTGAHKINNAVA 113

Query: 168 QAWYNLQEGIKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWG 227
           QA    + G K V+ ETGAGQ G A A  C+ FGL C V+      + +      M+  G
Sbjct: 114 QALLAKKLGKKRVIAETGAGQHGVATATVCARFGLECVVYMGALDMERQALNVFRMRLLG 173

Query: 228 AKVHPSPSMITESGQRILQEDPSSPGSLGIAISEAVEVAAKNPD-TKYCLGSVLN----- 281
           A+V         +G   L++          A SEA+     N + T Y LGSV       
Sbjct: 174 AEVRA-----VHAGTATLKD----------ATSEAIRDWVTNVETTHYILGSVCGPHPYP 218

Query: 282 -HVLLHQSVIGEECLKQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFIREK 329
             V    +VIG+E  KQ +E  G  PD+++ C GGGSN  GL   FI +K
Sbjct: 219 MMVREFHAVIGKETRKQALEKWGGKPDILVACVGGGSNAIGLFHEFIDDK 268


>Medtr5g005670.1 | tryptophan synthase beta type 2 | HC |
           chr5:566635-569952 | 20130731
          Length = 466

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 125 LWRPTPLIRAKRLEKLLDTPA-----RIYYKYEGVSPAGSHKPNSAVPQAWYNLQEGIKN 179
           + R TPL  A+RL +   +        IY K E ++  GSHK N+A+ QA    + G+K+
Sbjct: 123 VGRETPLYHAQRLSEHYKSKNGGKGPEIYLKREDLNHTGSHKMNNALAQAMIAKRIGLKS 182

Query: 180 VVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGAKVHPSPSMITE 239
           VVT TG+G  G A A AC+   L C V+      D +     +M+  GAKV         
Sbjct: 183 VVTATGSGHHGLATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVE-------- 234

Query: 240 SGQRILQEDPSSPGSLGIAISEAVEVAAKNPDTKYCL-GSVLN------HVLLHQSVIGE 292
                     +  G    A SEA      + +  Y L GS +        V   QSVIG+
Sbjct: 235 ----------AVNGCFKDASSEAFRCWVGDLENSYHLSGSAVGPHPCPTMVREFQSVIGK 284

Query: 293 ECLKQM-EAIGETPDVIIGCTGGGSNFAGLSFPFIRE 328
           E  KQ  E  G  PD+I+   G GSN  G+   F+ +
Sbjct: 285 ETRKQAWEKWGGKPDIIVASVGTGSNALGMFHEFLSD 321