Miyakogusa Predicted Gene

Lj3g3v2746110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2746110.1 tr|D3EPF3|D3EPF3_UCYNA Protein thf1
OS=cyanobacterium UCYN-A GN=thf1 PE=3 SV=1,29.72,2e-18,PS_II_psb29:
photosystem II biogenesis protein Psp,Photosystem II Psp29,
biogenesis; coiled-coil,NUL,
NODE_25831_length_1355_cov_419.680450.path1.1
         (297 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089795.1 | photosystem II biogenesis protein | HC | chr2:...   472   e-133
Medtr4g045980.1 | photosystem II biogenesis protein | HC | chr4:...   459   e-129

>Medtr2g089795.1 | photosystem II biogenesis protein | HC |
           chr2:37978293-37974978 | 20130731
          Length = 287

 Score =  472 bits (1214), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/287 (80%), Positives = 254/287 (88%), Gaps = 1/287 (0%)

Query: 1   MAALTSLSFSAVTQCSERKATLSSTRFLASNSEVFRIRTDFSYHYGGVRASNSSSKMVIQ 60
           MAALTSLSFSA +QCS+RK+TLSSTRFLAS+S++F IRTD SYH  GVR  NS+SKMVIQ
Sbjct: 1   MAALTSLSFSATSQCSQRKSTLSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQ 60

Query: 61  CMSSETDVPPPVSETKLSFLKAYKRPIPSIYNNVLQELIVQQHLMKYKASYRYDPVFALG 120
           CMSS TDVP  VSETKL+FLKAYKRPIPSIYNNVLQELIVQ HLM+YK SY+YD VFALG
Sbjct: 61  CMSSVTDVPS-VSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALG 119

Query: 121 FVTVYDKLMEGYPSDEDRDAIFQAYINALKEDPEQYRKDAQKLEEWARAQNPTSLVEFSS 180
           FVTVYDKLMEGY S+E+RD IF+AYINALKEDPEQYR DA+KLE+WA+AQN  SLVEFSS
Sbjct: 120 FVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRIDAKKLEDWAKAQNSISLVEFSS 179

Query: 181 KEGEVEGILKDIAVRAGGKGEFSYSRFFAVGLFRLLELANATEPTILEKLCAALNIDKRS 240
           +EGEVEG+LKDIA RAG KGEFSYSRFFAVGLFRLLELANATEPTIL+KLCAALNIDKRS
Sbjct: 180 REGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRS 239

Query: 241 VDRDLDVYRNLLSRLVQAKELLREYVDXXXXXXXXXAEPQKANEAVT 287
           VDRDLDVYR LLS+LVQAKEL RE++D          EPQKAN A+T
Sbjct: 240 VDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANGAIT 286


>Medtr4g045980.1 | photosystem II biogenesis protein | HC |
           chr4:15984631-15979214 | 20130731
          Length = 303

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/296 (77%), Positives = 253/296 (85%), Gaps = 4/296 (1%)

Query: 1   MAALTS-LSFSAVTQCSERK-ATLSSTRFLASNSEVFRIRTDFSYHYGGV-RASNSSSKM 57
           MAA+TS  SFS +TQ S+RK  TLSSTRF  S+S+  R R   S  Y GV R SN  SK+
Sbjct: 1   MAAVTSSFSFSTLTQSSQRKLTTLSSTRFFGSDSDAVRFRFSISLRYVGVVRTSNFVSKL 60

Query: 58  VIQCMSSETDVPPPVSETKLSFLKAYKRPIPSIYNNVLQELIVQQHLMKYKASYRYDPVF 117
           V++C SS +D PP VSETKL+FLKAYKRPIPSIYN+VLQELIVQQHLM+YK SYRYDPVF
Sbjct: 61  VVRCSSSVSD-PPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVF 119

Query: 118 ALGFVTVYDKLMEGYPSDEDRDAIFQAYINALKEDPEQYRKDAQKLEEWARAQNPTSLVE 177
           ALGFVTVYD+LMEGYPSDEDRDAIFQAYINALKEDP QYR DAQKLEEWARAQN TSL+E
Sbjct: 120 ALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIE 179

Query: 178 FSSKEGEVEGILKDIAVRAGGKGEFSYSRFFAVGLFRLLELANATEPTILEKLCAALNID 237
           FSS+EGEVEG LKDIA RAGG G+FSYSRFFAVGLFRLLELANA EPTILEKLC+ALNI+
Sbjct: 180 FSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNIN 239

Query: 238 KRSVDRDLDVYRNLLSRLVQAKELLREYVDXXXXXXXXXAEPQKANEAVTKCLGHQ 293
           K+SVDRDLDVYRNLLS+LVQAKELL+EY+D         AEPQKANEA++KCLG +
Sbjct: 240 KKSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISKCLGQE 295