Miyakogusa Predicted Gene

Lj3g3v2742950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2742950.1 tr|I3RZ73|I3RZ73_LOTJA Cytochrome b6-f complex
iron-sulfur subunit OS=Lotus japonicus PE=2 SV=1,95.36,0,no
description,Rieske [2Fe-2S] iron-sulphur domain; seg,NULL;
CytB6-F_Fe-S,Cytochrome b6-f complex F,CUFF.44592.1
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089510.1 | cytochrome b6-F complex iron-sulfur subunit | ...   370   e-103
Medtr7g084150.1 | cytochrome B-c1 complex subunit Rieske protein...    50   1e-06

>Medtr2g089510.1 | cytochrome b6-F complex iron-sulfur subunit | HC
           | chr2:37843606-37846116 | 20130731
          Length = 229

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/239 (77%), Positives = 199/239 (83%), Gaps = 12/239 (5%)

Query: 1   MSSTTLSPVTPSQLCSGKSGIFCPSQALLVKPARNQMVGKAKGIRIACMATRGLRLPAVA 60
           MSSTTLSP TPSQLCSGKSGI CPS  LLVKP R QM+GK KG+ I C AT         
Sbjct: 1   MSSTTLSPATPSQLCSGKSGISCPSIGLLVKPTRTQMIGKGKGMSITCQAT--------- 51

Query: 61  TSIPAYRVPDMEKRKXXXXXXXGAISLPSAGMLVPYATFFAPPGSGSATGGTIAKDAIGN 120
             IPA RVPDM KR+       GA+SLP+AGMLVPY +F  PPGSGS+TGGT+AKDA+GN
Sbjct: 52  -GIPADRVPDMSKRETLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGN 110

Query: 121 DVVAEQWLKAHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEK 180
           DVVA +WLK+HGPGDRTLTQGLKGDPTYLVVE DRTLAT+ INAVCTHLGCVVPFN AEK
Sbjct: 111 DVVAAEWLKSHGPGDRTLTQGLKGDPTYLVVESDRTLATFAINAVCTHLGCVVPFNQAEK 170

Query: 181 KFICPCHGSQYNDQGRVVRGPAPLSLALAHCD--VVDGKVVFVPWVETDFRTGDAPWWA 237
           KFICPCHGSQYNDQGRVVRGPAPLSLALAHCD  V DGKVVFVPWVETDFRTGDAPWW+
Sbjct: 171 KFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVDDGKVVFVPWVETDFRTGDAPWWS 229


>Medtr7g084150.1 | cytochrome B-c1 complex subunit Rieske protein |
           HC | chr7:32445334-32447652 | 20130731
          Length = 273

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 165 VCTHLGCVVPFNTAE-KKFICPCHGSQYNDQGRVVRGPAPLSLAL 208
           VCTHLGC+   N  +   + CPCHGS Y+  GR+ +GPAP +L +
Sbjct: 215 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEV 259