Miyakogusa Predicted Gene

Lj3g3v2741930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2741930.1 Non Characterized Hit- tr|I1IP53|I1IP53_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,46.15,3e-19,DUF565,Uncharacterised protein family Ycf20;
seg,NULL,NODE_53549_length_1750_cov_11.465143.path2.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683...   265   2e-71
Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427...   198   2e-51
Medtr4g093535.1 | antigen receptor-like protein | HC | chr4:3715...    90   2e-18

>Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683 |
           20130731
          Length = 186

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 154/191 (80%), Gaps = 5/191 (2%)

Query: 8   MLSNYMTCARAISIDQISSRASKVGLSAFFYKTTFGQKQCAPCFSVIFAQPCLMINLRKM 67
           MLSN MT A+ I +D ISSR S+VGL+AFFYKT FGQK  +PCFS  FAQPCL++  ++ 
Sbjct: 1   MLSNCMTSAKFICLDYISSRVSEVGLAAFFYKTAFGQK-LSPCFSFHFAQPCLVVGFKRT 59

Query: 68  TWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGF 127
           TWSVR              GTNGRTRII+VIQEF+T LGSK+++VKKNLPMKLLFFL GF
Sbjct: 60  TWSVRSSIDDSSFSPSN--GTNGRTRIIRVIQEFQTTLGSKIEKVKKNLPMKLLFFLIGF 117

Query: 128 YCATAFSTVIGQTGDWDILSAALAVFVVEGIGALMYSVSIPLVIKIRSLTAIFNYWKAGL 187
           YCATAFSTVIGQTGDWDILSAALAV VVEGIGALMYS S+PL  K  S+ ++FNYWKAGL
Sbjct: 118 YCATAFSTVIGQTGDWDILSAALAVVVVEGIGALMYSASLPLFTK--SVISVFNYWKAGL 175

Query: 188 TMGLFLDSFKY 198
           T+GLFLDSFKY
Sbjct: 176 TLGLFLDSFKY 186


>Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427 |
           20130731
          Length = 128

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 108/132 (81%), Gaps = 4/132 (3%)

Query: 67  MTWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAG 126
           MTWSVR              GTNGRTRII+VIQEFRT LGSK+++VKKNLPMKLLFFL G
Sbjct: 1   MTWSVRSSINDSSFSPSN--GTNGRTRIIRVIQEFRTTLGSKIEKVKKNLPMKLLFFLVG 58

Query: 127 FYCATAFSTVIGQTGDWDILSAALAVFVVEGIGALMYSVSIPLVIKIRSLTAIFNYWKAG 186
           FYCATAFSTVIGQTGDWDILSAALAV V EGIGALMYS S+PL  K  SL ++FNYWKAG
Sbjct: 59  FYCATAFSTVIGQTGDWDILSAALAVVVAEGIGALMYSASLPLFTK--SLISVFNYWKAG 116

Query: 187 LTMGLFLDSFKY 198
           LT+GLFLDSFKY
Sbjct: 117 LTLGLFLDSFKY 128


>Medtr4g093535.1 | antigen receptor-like protein | HC |
           chr4:37153633-37155590 | 20130731
          Length = 201

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN P K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 90  GGTRLGRILSAGGRQLLDKLNSARKNFPTKVFLLLLGFYTANALATILGQTGDWDVLVAG 149

Query: 150 LAVFVVEGIGALMY-SVSIPLVIKIRSLTAIFNYWKAGLTMGLFLDSFK 197
           + V  +EGIG L+Y         +++S   + NYWKAG+ +GLF+D+FK
Sbjct: 150 VVVAAIEGIGMLIYKKPPTTRTGRLQSFLVMVNYWKAGICLGLFVDAFK 198