Miyakogusa Predicted Gene

Lj3g3v2735120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2735120.1 tr|G7JDE1|G7JDE1_MEDTR ATP-dependent DNA helicase
2 subunit OS=Medicago truncatula GN=MTR_4g023560 P,83.46,0,KU P80 DNA
HELICASE,NULL; KU AUTOANTIGEN DNA HELICASE,NULL; no description,NULL;
no description,Spen,CUFF.44529.1
         (680 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g023560.1 | ATP-dependent DNA helicase 2 subunit Ku80 | HC...  1174   0.0  

>Medtr4g023560.1 | ATP-dependent DNA helicase 2 subunit Ku80 | HC |
           chr4:7973007-7979747 | 20130731
          Length = 683

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/683 (83%), Positives = 632/683 (92%), Gaps = 6/683 (0%)

Query: 1   MARNKEALLLLLDVGPTMHSVLPEIEKVTSLLVQKKLIYNKYDEVGIVLFGTEDTDNELT 60
           MARNKEALLLLLDVGP+MH VLPE+EKV S+LVQKKLIYNKYDEVGIVLFGTEDTDNELT
Sbjct: 1   MARNKEALLLLLDVGPSMHPVLPEVEKVCSMLVQKKLIYNKYDEVGIVLFGTEDTDNELT 60

Query: 61  TEVGGYDHVVVLKNIKVVDGDIVEALQQLPRGTSNGDFLDAVIVGLDMLIKKFGETNKGK 120
           TEVGGY HVVV KN KVVDGDIVEALQQLPRGT++GDFLDAVIV +DMLIKKFG+TNKGK
Sbjct: 61  TEVGGYQHVVVSKNSKVVDGDIVEALQQLPRGTTDGDFLDAVIVAMDMLIKKFGDTNKGK 120

Query: 121 KRVCLITNAQCPIKYPFEGTKEEQVTAIAKQMTIHGMKMESIILRGKISQDGNKRTMDEN 180
           KR+CLITNAQCPIK P+EG+KEEQVT IAKQMT HGMKMESII+RGK+SQD NK  MDEN
Sbjct: 121 KRLCLITNAQCPIKDPYEGSKEEQVTTIAKQMTAHGMKMESIIVRGKLSQDANKEIMDEN 180

Query: 181 DRLLNIFAEETSTRLLYVENPISLFGAIKTRTITPVTVFRGDLELSPKLRIKVMVYKKTA 240
           DRLLNIF++ET TRLLYVE+PISLFGA+KTR ITPVTVFRGDLELSPKLRIKVMVYKKT 
Sbjct: 181 DRLLNIFSKETQTRLLYVEDPISLFGALKTRNITPVTVFRGDLELSPKLRIKVMVYKKTQ 240

Query: 241 EEKFPTLKRYSDKAPLNDKYATHEVKVEYEYKSSEDPDKVIPPDQRIKGYRYGPQIVPIS 300
           EEKFPTLK++SDKAP  DK+ATHEVKV+YEYKSS DPDKV+PPDQRIKGYRYGPQI+PIS
Sbjct: 241 EEKFPTLKKFSDKAPQTDKFATHEVKVDYEYKSSADPDKVVPPDQRIKGYRYGPQIIPIS 300

Query: 301 STEWEAVKFKTEKGVKLLGFTDSSNVLRHQYMKDVYVFIAEPENTKAILAVSALARAMKE 360
           S EW+AVKFK EKGVKLLGFTDSSN+LRHQYMKDVYVFIAEP NTKA+LAVSAL+RAMKE
Sbjct: 301 SAEWDAVKFKPEKGVKLLGFTDSSNILRHQYMKDVYVFIAEPGNTKAVLAVSALSRAMKE 360

Query: 361 MNKVAILRCVWRQGQANVVIGVLTPNLSDGDNIPDSFYFNVLPFAEDVREFQFSSFTNFP 420
           MNKVAILRCVWRQGQANVVIGVLTPN+SD +N+PDSFYFN+LPFAEDVREFQF SF++FP
Sbjct: 361 MNKVAILRCVWRQGQANVVIGVLTPNVSDRENLPDSFYFNILPFAEDVREFQFPSFSSFP 420

Query: 421 ASCQPNEQQLESAANLVKMLDLAPQGKEEVLRPDFTPNPVLERFYRFLEVKSKHPDAAVP 480
           ASCQPNEQQLESAAN +KMLDLAP GK+EVL PDFTPNPVL RFY +L++KSKHPDA+VP
Sbjct: 421 ASCQPNEQQLESAANFIKMLDLAPDGKQEVLLPDFTPNPVLARFYHYLDLKSKHPDASVP 480

Query: 481 PIDDTLKKITEPDADLVLQNQSVIDAFCRSFELKENPLKK-RRLLQENISSSMDEEGKGN 539
           P+D TL+KITEP+ DLVLQNQSVID++ RSFE++ NPLKK RR L+   S   DEEGK N
Sbjct: 481 PLDYTLRKITEPETDLVLQNQSVIDSYRRSFEMQGNPLKKPRRFLRGKTS---DEEGKEN 537

Query: 540 ITAQPANLIE--SVKVENIGDVTPVQDFEAMISRRDSPEWVVKAIKDMKNKIFDLVEDSN 597
           ITA PANLIE  S+KVE IGD+TPVQDFEAMISRRDSP+WVVKAIKDMK+KIFD+VEDS+
Sbjct: 538 ITAPPANLIEYTSIKVEKIGDLTPVQDFEAMISRRDSPDWVVKAIKDMKDKIFDMVEDSH 597

Query: 598 DGDNYPKALECLVVLRKGCILEQEPKQFNDFLKHLCNFCREKNLDGFCEYLASKELTLIS 657
           +GDNYPKAL+CLV LRKGCILEQEPKQFNDFLKHLCNFC+EKNL  FCE+LA+K LTLI 
Sbjct: 598 EGDNYPKALDCLVALRKGCILEQEPKQFNDFLKHLCNFCQEKNLQSFCEHLAAKGLTLIP 657

Query: 658 KTEAADSEVTDDEARSFLVKSET 680
           KTEA DS+V+D+EARSFLVKSE+
Sbjct: 658 KTEAIDSDVSDEEARSFLVKSES 680