Miyakogusa Predicted Gene
- Lj3g3v2720160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2720160.1 Non Characterized Hit- tr|I1JKI3|I1JKI3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42209
PE,63.93,0,seg,NULL; PAP/OAS1 substrate-binding domain,NULL;
Nucleotidyltransferase,NULL; PAP_assoc,PAP/25A-ass,CUFF.44497.1
(744 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c... 630 e-180
Medtr8g033430.1 | hypothetical protein | HC | chr8:12910095-1290... 120 4e-27
Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ... 98 3e-20
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ... 98 3e-20
Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c... 88 3e-17
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c... 86 9e-17
Medtr2g079330.1 | nucleotidyltransferase family protein | HC | c... 67 6e-11
Medtr2g079330.3 | nucleotidyltransferase family protein | HC | c... 65 3e-10
Medtr2g079330.2 | nucleotidyltransferase family protein | HC | c... 64 4e-10
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c... 55 3e-07
Medtr8g035490.1 | hypothetical protein | HC | chr8:12925786-1292... 53 1e-06
>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
chr8:12908258-12903936 | 20130731
Length = 367
Score = 630 bits (1625), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/356 (83%), Positives = 327/356 (91%), Gaps = 1/356 (0%)
Query: 390 KDARLLDSRGEQMLSQRGRMYKRQMMCRRDIDSFNGSFLAIYESLIPPEEEKLKQKQLLG 449
+D R DSRG Q+LSQR R +KRQMMCRRDIDSF+ FL+IYESLIPPEEEKLKQ QLLG
Sbjct: 10 QDGRSSDSRGNQLLSQRARTFKRQMMCRRDIDSFSVPFLSIYESLIPPEEEKLKQNQLLG 69
Query: 450 VLENLVSKEWPTSKLYLYGSCANSFGVSKSDIDVCLAIKEAE-DKSKIIMKLADILQSDN 508
+LE LV KEWP ++LYLYGSCA+SFGVSKSDIDVCLAI++A+ DKSKIIMKLADILQSDN
Sbjct: 70 LLEKLVCKEWPMARLYLYGSCASSFGVSKSDIDVCLAIQDADVDKSKIIMKLADILQSDN 129
Query: 509 LQNVQALTRARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIK 568
LQNVQALTRARVPIVKLMDP TGISCDIC+NN+LAVVNTKLLRDY ID RLRQLAFIIK
Sbjct: 130 LQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQLAFIIK 189
Query: 569 HWAKSRGVNETYHGTLSSYAYVLMCIHFLQLRRPAILPCLQEMESTYSVTVDDTYCSYFD 628
HWAKSRGVNETYHGTLSSYAYVLMC+HFLQ +RPAILPCLQ M TYSV VD+ C++FD
Sbjct: 190 HWAKSRGVNETYHGTLSSYAYVLMCVHFLQQQRPAILPCLQGMNPTYSVRVDNVDCAFFD 249
Query: 629 QVDRLCNFGRNNKETIARLVWGFFYYWAYCHDYANTVISVRTGSILSKREKDWTRRIGND 688
QV++L +FGR+NK+TIA LVWGFF+YWAYCHDYAN+VISVRTGS +SKR+KDWTRRIGND
Sbjct: 250 QVEKLGHFGRHNKDTIAHLVWGFFFYWAYCHDYANSVISVRTGSTISKRDKDWTRRIGND 309
Query: 689 RHLICIEDPFETSHDLGRVVDKRSIKVLREEFERAADIMQNDPNPCIKLFEPYVRS 744
RHLICIEDPFETSHDLGRVVDKRSIKVLREEFERAADIMQ DPNPCIKLFEPYV S
Sbjct: 310 RHLICIEDPFETSHDLGRVVDKRSIKVLREEFERAADIMQYDPNPCIKLFEPYVCS 365
>Medtr8g033430.1 | hypothetical protein | HC |
chr8:12910095-12909211 | 20130731
Length = 294
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 173/400 (43%), Gaps = 119/400 (29%)
Query: 1 MHGGGG-DFPSPQPPNSGEYLLSLIXXXXXXXXXXXXXXXXXXXXXXAIDPAVAFMGPSI 59
M+GGGG +FP PQP N G++LLSL+ IDPAVA MGP+I
Sbjct: 1 MNGGGGSNFPPPQP-NGGDFLLSLLQKPRPNPHPSQSSTTQQSP---IIDPAVAMMGPTI 56
Query: 60 PVAASPWQSNGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFGLPHNPFPQPRPTGN 119
P +NG D FGL HNPFP R
Sbjct: 57 P-------TNGHDHPNHHPHHNHHQHHQHLPPWSHTPSPH---VFGLTHNPFPLQRVPET 106
Query: 120 HYPAAAAQLHYNSGAALSDDLRRLGFPIEGNDKSTFV-------QQQELKLKFGSLPSVS 172
HY + +GA+L++DLRRLGFPI+ N+ + F+ QQQELKL+FGSLP+VS
Sbjct: 107 HY----SNFTNANGASLTEDLRRLGFPIQSNNNNGFIQQQQHQHQQQELKLQFGSLPTVS 162
Query: 173 Y--ASSPEVPSNGDSLPNLKFDNGFDRNLHVDPKSGPNNHGVVGGYRVLGSAPETTRXXX 230
Y A+S +V +NG DRN ++ + GV+G +R+ E R
Sbjct: 163 YAAATSHDVSTNGF----------VDRN-KIEKR------GVIGDFRLT----EQIRVPP 201
Query: 231 XXGFGNKSRGTGYWGSGTTRKGSEVGEDRGLAVGSGEFGARNENLHSKKESGRMGSGGRS 290
GFGN ++G G G G R + +G G+
Sbjct: 202 PPGFGN-NKGDGELGGG-----------RNVRLGIGD----------------------- 226
Query: 291 NTRGNVAREVGLPDQIDXXXXXXXXXXXXXXXXXIEESRSSLNRVGVVEDGVSDKHMGVG 350
RGNV E+ LPDQ+D S S+L
Sbjct: 227 --RGNVGHELRLPDQLDHPG---------------PPSGSNL------------------ 251
Query: 351 SRGGADVDLLGEQIVESLLLEDESDDKNNNSKQRRTPREK 390
G DVD +GE++ +SLLLEDE D+K+ NS +RR P+EK
Sbjct: 252 RSGYDDVDAVGERLADSLLLEDEIDEKSGNSMKRRGPKEK 291
>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
chr3:30854466-30848016 | 20130731
Length = 479
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 42/310 (13%)
Query: 467 YGSCANSFGVSKSDIDVCL---------AIKEAEDKSKIIMKLADILQSDNLQNVQALTR 517
+GS ++ D+D+ + A + ++ ++ L + N Q + +
Sbjct: 53 FGSVVSNLFTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPK 112
Query: 518 ARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIKHWAKSRGVN 577
ARVPI+K GISCD+ +NN+ ++ +K L ID R L ++K WAK+ +N
Sbjct: 113 ARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKIN 172
Query: 578 ETYHGTLSSYAYVLMCIHFLQLRRPAILPCLQEMESTYSVTVDDTYCSYFDQ---VDRLC 634
+ G+ +S+ L+ I LQ PAILP L+++ Y++ VD+ D + C
Sbjct: 173 NSKTGSFNSFTLSLLVIFHLQTCAPAILPPLKDIYP-YNM-VDELRGVRADAENLIAETC 230
Query: 635 NFGRN----------NKETIARLVWGFFYYWAYCHDYANTV-ISVRTGSILSKREKDWTR 683
N N++++ L F +A ++A+ + I +G W +
Sbjct: 231 AANINRFISNKSRPINRKSLPELFVDFQRKFAQIDEWASEIGICTYSG--------QWEQ 282
Query: 684 RIGNDRHL-----ICIEDPFETSHDLGRVVDKRSIKVLREEFERAADIM----QNDPNPC 734
N R L I +EDPFE + GR V + +K + E F ++ QN +
Sbjct: 283 IKNNMRWLPKTYAIFVEDPFEQPENSGRSVSAKQLKKIAEAFVGTYSLLISKNQNQNSLL 342
Query: 735 IKLFEPYVRS 744
+L P+V S
Sbjct: 343 TQLAPPHVWS 352
>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
chr3:30856016-30848016 | 20130731
Length = 479
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 42/310 (13%)
Query: 467 YGSCANSFGVSKSDIDVCL---------AIKEAEDKSKIIMKLADILQSDNLQNVQALTR 517
+GS ++ D+D+ + A + ++ ++ L + N Q + +
Sbjct: 53 FGSVVSNLFTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPK 112
Query: 518 ARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIKHWAKSRGVN 577
ARVPI+K GISCD+ +NN+ ++ +K L ID R L ++K WAK+ +N
Sbjct: 113 ARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKIN 172
Query: 578 ETYHGTLSSYAYVLMCIHFLQLRRPAILPCLQEMESTYSVTVDDTYCSYFDQ---VDRLC 634
+ G+ +S+ L+ I LQ PAILP L+++ Y++ VD+ D + C
Sbjct: 173 NSKTGSFNSFTLSLLVIFHLQTCAPAILPPLKDIYP-YNM-VDELRGVRADAENLIAETC 230
Query: 635 NFGRN----------NKETIARLVWGFFYYWAYCHDYANTV-ISVRTGSILSKREKDWTR 683
N N++++ L F +A ++A+ + I +G W +
Sbjct: 231 AANINRFISNKSRPINRKSLPELFVDFQRKFAQIDEWASEIGICTYSG--------QWEQ 282
Query: 684 RIGNDRHL-----ICIEDPFETSHDLGRVVDKRSIKVLREEFERAADIM----QNDPNPC 734
N R L I +EDPFE + GR V + +K + E F ++ QN +
Sbjct: 283 IKNNMRWLPKTYAIFVEDPFEQPENSGRSVSAKQLKKIAEAFVGTYSLLISKNQNQNSLL 342
Query: 735 IKLFEPYVRS 744
+L P+V S
Sbjct: 343 TQLAPPHVWS 352
>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 580
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 30/274 (10%)
Query: 467 YGSCANSFGVSKSDIDVCLA---------IKEAEDKSKIIMKLADILQSDNLQNVQALTR 517
YGS +SD+D+ + +K+ + K KL +S ++ ++ +
Sbjct: 94 YGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILS 153
Query: 518 ARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIKHWAKSRGVN 577
A+VPIVK+ D TG+ CD+ V N + + +R ID R ++L ++K WAK+ +N
Sbjct: 154 AKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLLMKSWAKAHNIN 213
Query: 578 ETYHGTLSSYAYVLMCIHFLQLRRPAILP----CLQEMESTYSVTVDDTYCSYFDQVDRL 633
+ TL+S + V Q P ILP L+E SVT V
Sbjct: 214 SSKDATLNSLSIVSFVAFHFQTCDPPILPPFSTLLKEGADLESVT---------KAVKTY 264
Query: 634 CNFGRNNKETIARLVWGFFYYWAYCHDYANTVISVRTGSILSKREKDWTRRIGNDRHLIC 693
N+G NK+++A L A + + G S W + R+ +
Sbjct: 265 TNYGNKNKQSLAHLFVTLLVKLASVENLW------QNGYCTSSYNGSWV--LKKWRYSMS 316
Query: 694 IEDPFETSHDLGRVVDKRSIKVLREEFERAADIM 727
+ED + S ++ R V K + + + D +
Sbjct: 317 VEDFTDLSQNVARAVRAEGFKTIYKCIHNSIDYL 350
>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 458
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 21/245 (8%)
Query: 487 IKEAEDKSKIIMKLADILQSDNLQNVQALTRARVPIVKLMDPATGISCDICVNNILAVVN 546
+K+ + K KL +S ++ ++ + A+VPIVK+ D TG+ CD+ V N +
Sbjct: 1 MKKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAK 60
Query: 547 TKLLRDYGLIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQLRRPAILP 606
+ +R ID R ++L ++K WAK+ +N + TL+S + V Q P ILP
Sbjct: 61 SHFIRAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILP 120
Query: 607 ----CLQEMESTYSVTVDDTYCSYFDQVDRLCNFGRNNKETIARLVWGFFYYWAYCHDYA 662
L+E SVT V N+G NK+++A L A +
Sbjct: 121 PFSTLLKEGADLESVT---------KAVKTYTNYGNKNKQSLAHLFVTLLVKLASVENLW 171
Query: 663 NTVISVRTGSILSKREKDWTRRIGNDRHLICIEDPFETSHDLGRVVDKRSIKVLREEFER 722
+ G S W + R+ + +ED + S ++ R V K + +
Sbjct: 172 ------QNGYCTSSYNGSWV--LKKWRYSMSVEDFTDLSQNVARAVRAEGFKTIYKCIHN 223
Query: 723 AADIM 727
+ D +
Sbjct: 224 SIDYL 228
>Medtr2g079330.1 | nucleotidyltransferase family protein | HC |
chr2:33389842-33396770 | 20130731
Length = 514
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Query: 432 ESLIPPEEEKLKQKQLLGVLENLVSKEWPTSKLYLYGSCANSFGVSKSDIDVCLAIKEAE 491
E L P EEK K+ + + ++ WP ++ ++GS + SDIDV + +K
Sbjct: 126 EFLSPTPEEKAKRDAAIESVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVI-LKSGL 184
Query: 492 DKSKIIMKLA--DILQSDNLQNVQALTRARVPIVKLMDPATGISCDICVNNILAVVNTKL 549
K +I + + Q + +Q + +ARVPI+K ++ + +S DI + +
Sbjct: 185 PKPQIGLNAISRSLSQRSMAKKIQVIGKARVPIIKFVERKSCLSFDISFDLENGPKAAEY 244
Query: 550 LRDYGLIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQ 598
++D LR L I+K + + R +NE Y G + SYA + M + L+
Sbjct: 245 IQDAVAKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLR 293
>Medtr2g079330.3 | nucleotidyltransferase family protein | HC |
chr2:33389842-33395356 | 20130731
Length = 363
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Query: 432 ESLIPPEEEKLKQKQLLGVLENLVSKEWPTSKLYLYGSCANSFGVSKSDIDVCLAIKEAE 491
E L P EEK K+ + + ++ WP ++ ++GS + SDIDV + +K
Sbjct: 126 EFLSPTPEEKAKRDAAIESVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVI-LKSGL 184
Query: 492 DKSKIIMKLA--DILQSDNLQNVQALTRARVPIVKLMDPATGISCDICVNNILAVVNTKL 549
K +I + + Q + +Q + +ARVPI+K ++ + +S DI + +
Sbjct: 185 PKPQIGLNAISRSLSQRSMAKKIQVIGKARVPIIKFVERKSCLSFDISFDLENGPKAAEY 244
Query: 550 LRDYGLIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQ 598
++D LR L I+K + + R +NE Y G + SYA + M + L+
Sbjct: 245 IQDAVAKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLR 293
>Medtr2g079330.2 | nucleotidyltransferase family protein | HC |
chr2:33389842-33396770 | 20130731
Length = 361
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Query: 432 ESLIPPEEEKLKQKQLLGVLENLVSKEWPTSKLYLYGSCANSFGVSKSDIDVCLAIKEAE 491
E L P EEK K+ + + ++ WP ++ ++GS + SDIDV + +K
Sbjct: 126 EFLSPTPEEKAKRDAAIESVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVI-LKSGL 184
Query: 492 DKSKIIMKLA--DILQSDNLQNVQALTRARVPIVKLMDPATGISCDICVNNILAVVNTKL 549
K +I + + Q + +Q + +ARVPI+K ++ + +S DI + +
Sbjct: 185 PKPQIGLNAISRSLSQRSMAKKIQVIGKARVPIIKFVERKSCLSFDISFDLENGPKAAEY 244
Query: 550 LRDYGLIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQ 598
++D LR L I+K + + R +NE Y G + SYA + M + L+
Sbjct: 245 IQDAVAKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLR 293
>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 548
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 100/274 (36%), Gaps = 62/274 (22%)
Query: 467 YGSCANSFGVSKSDIDVCLA---------IKEAEDKSKIIMKLADILQSDNLQNVQALTR 517
YGS +SD+D+ + +K+ + K KL +S ++ ++ +
Sbjct: 94 YGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILS 153
Query: 518 ARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIKHWAKSRGVN 577
A+VPIVK+ D TG+ CD+ V N + + +R ID R ++L
Sbjct: 154 AKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLC------------- 200
Query: 578 ETYHGTLSSYAYVLMCIHFLQLRRPAILP----CLQEMESTYSVTVDDTYCSYFDQVDRL 633
+L C P ILP L+E SVT V
Sbjct: 201 ------------LLTC-------DPPILPPFSTLLKEGADLESVT---------KAVKTY 232
Query: 634 CNFGRNNKETIARLVWGFFYYWAYCHDYANTVISVRTGSILSKREKDWTRRIGNDRHLIC 693
N+G NK+++A L A + + G S W + R+ +
Sbjct: 233 TNYGNKNKQSLAHLFVTLLVKLASVENLW------QNGYCTSSYNGSWV--LKKWRYSMS 284
Query: 694 IEDPFETSHDLGRVVDKRSIKVLREEFERAADIM 727
+ED + S ++ R V K + + + D +
Sbjct: 285 VEDFTDLSQNVARAVRAEGFKTIYKCIHNSIDYL 318
>Medtr8g035490.1 | hypothetical protein | HC |
chr8:12925786-12926235 | 20130731
Length = 149
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%), Gaps = 3/45 (6%)
Query: 133 GAALSDDLRRLGFPIEGN-DKSTFVQQQELKLKFGSLPSVSYASS 176
G +L++ LRRLGFPIE + + ++FVQ ELKL+FGSLP+VSYA++
Sbjct: 74 GVSLAEYLRRLGFPIESSSNNNSFVQ--ELKLQFGSLPTVSYATT 116