Miyakogusa Predicted Gene

Lj3g3v2718810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2718810.1 tr|G7IHW5|G7IHW5_MEDTR 23S rRNA
(Uracil-5-)-methyltransferase rumA OS=Medicago truncatula
GN=MTR_2g1,92.11,0,seg,NULL; TRNA (URACIL-5-)-METHYLTRANSFERASE,NULL;
RNA M5U METHYLTRANSFERASE FAMILY,NULL; S-adenosyl,CUFF.44478.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100500.1 | 23S rRNA (uracil-5)-methyltransferase RumA | H...   485   e-137
Medtr4g059550.1 | zinc finger CCCH domain protein | HC | chr4:21...    75   1e-13

>Medtr2g100500.1 | 23S rRNA (uracil-5)-methyltransferase RumA | HC |
           chr2:43200585-43193800 | 20130731
          Length = 560

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/266 (87%), Positives = 247/266 (92%)

Query: 1   MLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPEVVSIMXXXXXXXXXXXXXE 60
           MLRSGRDV T LPE+MVNFVTSSYKP+LLK LVDKVSAFPEVVSIM             E
Sbjct: 294 MLRSGRDVMTGLPEVMVNFVTSSYKPDLLKVLVDKVSAFPEVVSIMNNVNTSVGNTSVGE 353

Query: 61  EEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLF 120
           EEYTL+GKS+ITETLRGLTFQISANSFFQTNT QAEVLYKLIEECAG+RGDGSE+VLDLF
Sbjct: 354 EEYTLHGKSSITETLRGLTFQISANSFFQTNTHQAEVLYKLIEECAGIRGDGSEVVLDLF 413

Query: 121 CGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSF 180
           CGTGTIGLTLARS +HVYGYEVVPQAIADARLNAKINGIQNATF++GDLNKID NFG++F
Sbjct: 414 CGTGTIGLTLARSVKHVYGYEVVPQAIADARLNAKINGIQNATFIEGDLNKIDANFGKNF 473

Query: 181 PKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGC 240
           PKPDIVISDPNRPGMHMKLIKFLLNL+APRIVYVSCNPATCARDLDYLCHGVAELN++GC
Sbjct: 474 PKPDIVISDPNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVAELNIEGC 533

Query: 241 YKLLSLQPVDMFPHTPHIECVCLLEL 266
           YKL+SLQPVDMFPHTPHIECVCLLEL
Sbjct: 534 YKLISLQPVDMFPHTPHIECVCLLEL 559


>Medtr4g059550.1 | zinc finger CCCH domain protein | HC |
           chr4:21946850-21939628 | 20130731
          Length = 830

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 71  ITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFCGTGTIGLTL 130
           I + +  L F IS  SFFQ NT  AE LY L  + A +  D   ++ D+ CGTG IGLTL
Sbjct: 524 IHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPD--TLLFDICCGTGAIGLTL 581

Query: 131 ARSARHVYGYEVVPQAIADARLNAKINGIQNATFV 165
           A     V G E+   A++DA  NA+ NGI+N  FV
Sbjct: 582 AHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFV 616



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 28/109 (25%)

Query: 185 IVISDPNRPGMHMKLIKFL-LNLKAPRIVYVSCNPATCARDLDYLC-------------- 229
           + I DP R G+H  +IK L  + +  R+VY+SCNP +   +   LC              
Sbjct: 701 VAIVDPPRAGLHPTVIKALRTHTRLRRLVYISCNPESLVANAIELCTPSPTEMERGNKDN 760

Query: 230 -------------HGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLE 265
                        H    + +   +K +    VD+FPHTPH E V LLE
Sbjct: 761 RGWRRMSSAGLARHRAKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLE 809