Miyakogusa Predicted Gene

Lj3g3v2707740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2707740.1 Non Characterized Hit- tr|F6HY40|F6HY40_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,60.49,0.000000000000002, ,CUFF.44454.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g015560.1 | hypothetical protein | HC | chr8:5094109-50931...   114   2e-26

>Medtr8g015560.1 | hypothetical protein | HC |
          chr8:5094109-5093188 | 20130731
          Length = 79

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1  MSVKKSLSFNDGNGI--------AKRRRFDRWFSSVEVVPMEQGKQLKDMDSNKLKAEIK 52
          MSVKKSLSFN G+ I         KRRRFDR FSSVEVV ME+GK+LK+MDSNKLK+EIK
Sbjct: 1  MSVKKSLSFNGGSTIQNLKKEKSTKRRRFDRCFSSVEVVSMEEGKKLKEMDSNKLKSEIK 60

Query: 53 KWAKAVVAYARQVSGRFGS 71
          KWAKAVVAYARQVS RFGS
Sbjct: 61 KWAKAVVAYARQVSARFGS 79