Miyakogusa Predicted Gene
- Lj3g3v2704600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2704600.1 tr|I1KGF2|I1KGF2_SOYBN Ubiquitin
carboxyl-terminal hydrolase OS=Glycine max PE=3 SV=1,84.65,0,Cysteine
proteinases,NULL; Ubiquitin-like,NULL; seg,NULL; UBIQUITIN_1,Ubiquitin
conserved site; UCH_,CUFF.44458.1
(509 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g015660.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 822 0.0
Medtr7g106570.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 55 1e-07
Medtr2g087710.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 55 2e-07
Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like pro... 53 8e-07
Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like pro... 53 8e-07
Medtr3g087140.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 52 1e-06
Medtr1g010040.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 51 2e-06
Medtr1g010040.2 | ubiquitin carboxyl-terminal hydrolase | HC | c... 51 2e-06
Medtr3g108660.2 | ubiquitin carboxyl-terminal hydrolase | HC | c... 51 3e-06
Medtr3g108660.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 51 3e-06
Medtr8g090190.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 50 4e-06
>Medtr8g015660.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr8:5156920-5167537 | 20130731
Length = 554
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/508 (78%), Positives = 419/508 (82%), Gaps = 29/508 (5%)
Query: 1 MITVSVKWQKELFKDVEIDTTQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDANWSTL 60
+ VSVKWQKELFKDVEIDT+QPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDA+W+ L
Sbjct: 75 FLIVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDADWAKL 134
Query: 61 GVKEGQKLMMMGTVDEIVKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQ 120
GVK GQKLMMMGT DEI+KSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQ
Sbjct: 135 GVKAGQKLMMMGTADEIMKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQ 194
Query: 121 CLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRK 180
CLHSVPELKSALIDYS SGR+ DVDQ+SHMLT+ATRDLF+ELDKSVK VAPMQFWMVLRK
Sbjct: 195 CLHSVPELKSALIDYSHSGRSNDVDQTSHMLTVATRDLFSELDKSVKAVAPMQFWMVLRK 254
Query: 181 KYPQFAQLHNGVFMQQDAEECWXXXXXXXXXXXXXPGSSENLDAVKANFGIGLISRTYCQ 240
KYPQF QLHNGVFMQQDAEECW PGSSEN DAVKA FGI L SR YCQ
Sbjct: 255 KYPQFGQLHNGVFMQQDAEECWTQILYTLSQSLRSPGSSENTDAVKALFGIELNSRIYCQ 314
Query: 241 XXXXXXXXXXXXXXLKCHISQEVNHLHEGLKHGLKSELEKASPVLGRSAIYLKESHINAL 300
LKCHISQEVNHLHEGLKHGLKSELEKAS LGRSAIYLKES INAL
Sbjct: 315 ESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASAALGRSAIYLKESRINAL 374
Query: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSEDLRKKLETPRQILRNXXXX 360
PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCS+DL+KKLE PR+ LR+
Sbjct: 375 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSDDLKKKLEAPRKFLRDEEGK 434
Query: 361 XXXXXXXXXSAVHKENDVKMSDAEGSSNGGGEPSVAPMEEGKNLQHSTAKXXXXXXXXXX 420
S+V KENDVKMSDAEGSSNGGGEPSVAPMEE
Sbjct: 435 KLGLKVNEKSSVPKENDVKMSDAEGSSNGGGEPSVAPMEE-------------------- 474
Query: 421 XXXXXILCAGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPR 480
GEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPR
Sbjct: 475 ---------GEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPR 525
Query: 481 LEEDITKLSGGGDWHMAYIIMYKARVVS 508
+++DIT+LSGGGDWHMAYIIMYKARVVS
Sbjct: 526 VQDDITRLSGGGDWHMAYIIMYKARVVS 553
>Medtr7g106570.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr7:43382337-43390245 | 20130731
Length = 899
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 97 VAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALI-DYSQSGRNTDVDQSSHMLTIAT 155
V ++G T GL NLGNTC+MNS +QCL P+L + DY + + + L ++
Sbjct: 281 VRSLGLT-GLHNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRREINYENPLGMNGELALSF 339
Query: 156 RDLFNEL-DKSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
DL +L P+AP F M L PQF+ +MQ D++E
Sbjct: 340 GDLLRQLWVPGASPLAPKMFKMKLANFAPQFSG-----YMQHDSQE 380
>Medtr2g087710.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr2:36896258-36906346 | 20130731
Length = 894
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 96 QVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALI-DYSQSGRNTDVDQSSHMLTIA 154
+ ++G T GL NLGNTC+MNS+LQCL P+L + DYS+ + + + + A
Sbjct: 264 EAGSLGLT-GLQNLGNTCFMNSSLQCLTHTPKLVDYFLEDYSREINSDNPLGMNGEIASA 322
Query: 155 TRDLFNEL-DKSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
DL +L PVAP F L + PQF+ F Q D++E
Sbjct: 323 FGDLLRKLWAPGASPVAPRMFKSKLARFAPQFSG-----FNQHDSQE 364
>Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr1:34854787-34865759 | 20130731
Length = 922
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLF 159
G AGL NLGNTC+MNS LQCL H+ P + L DYS + L +A DL
Sbjct: 317 GGLAGLQNLGNTCFMNSALQCLVHTPPLAEFFLEDYSDEINMENPLGMRGELALAFGDLL 376
Query: 160 NELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
+L S + VAP F L + PQF+ + Q D++E
Sbjct: 377 RKLWSSGRTAVAPRAFKGKLARFAPQFSG-----YNQHDSQE 413
>Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr1:34854807-34865759 | 20130731
Length = 922
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLF 159
G AGL NLGNTC+MNS LQCL H+ P + L DYS + L +A DL
Sbjct: 317 GGLAGLQNLGNTCFMNSALQCLVHTPPLAEFFLEDYSDEINMENPLGMRGELALAFGDLL 376
Query: 160 NELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
+L S + VAP F L + PQF+ + Q D++E
Sbjct: 377 RKLWSSGRTAVAPRAFKGKLARFAPQFSG-----YNQHDSQE 413
>Medtr3g087140.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr3:39509881-39514966 | 20130731
Length = 366
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 89 EDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYSQSGRNTDVDQSS 148
++ PE E H GL N GNTCY NS LQ L+ + L+ Y G+N ++ +
Sbjct: 14 DNFPEGE------HYFGLENFGNTCYCNSVLQALYFCVPFREQLLQY--YGKNKNITDAE 65
Query: 149 HMLTIATRDLFNELD---KSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
L +LF+++ + +AP +F L+K+ F +M QDA E
Sbjct: 66 ENLLTCLAELFSQISSQKRKTGVIAPKRFVQRLKKQNELFRS-----YMHQDAHE 115
>Medtr1g010040.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr1:1703938-1713526 | 20130731
Length = 1083
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 434 TQMTGVYDLVAVLTHKGRSADSGHYVGWVKQEN-GKWIEFDDD 475
+Q +YDL AVL HKG +A+SGHY+ +K N G+W EFDD+
Sbjct: 338 SQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDE 380
>Medtr1g010040.2 | ubiquitin carboxyl-terminal hydrolase | HC |
chr1:1703938-1713376 | 20130731
Length = 1060
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 434 TQMTGVYDLVAVLTHKGRSADSGHYVGWVKQEN-GKWIEFDDD 475
+Q +YDL AVL HKG +A+SGHY+ +K N G+W EFDD+
Sbjct: 338 SQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDE 380
>Medtr3g108660.2 | ubiquitin carboxyl-terminal hydrolase | HC |
chr3:50189946-50180682 | 20130731
Length = 1003
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 434 TQMTGVYDLVAVLTHKGRSADSGHYVGWVKQEN-GKWIEFDDDN 476
+Q VYDL AVL HKG +SGHY+ +K +N G+W EFDD++
Sbjct: 338 SQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDKNTGQWWEFDDEH 381
>Medtr3g108660.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr3:50189975-50179265 | 20130731
Length = 1083
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 434 TQMTGVYDLVAVLTHKGRSADSGHYVGWVKQEN-GKWIEFDDDN 476
+Q VYDL AVL HKG +SGHY+ +K +N G+W EFDD++
Sbjct: 338 SQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDKNTGQWWEFDDEH 381
>Medtr8g090190.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr8:37821953-37828258 | 20130731
Length = 369
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 105 GLFNLGNTCYMNSTLQCLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELD- 163
GL N GNTCY NS LQ L+ + L++Y G N + + L DLF+++
Sbjct: 24 GLENFGNTCYCNSVLQALYFCVPFREQLLEY--YGNNKTLGDAEENLLTCLADLFSQISS 81
Query: 164 --KSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
K +AP +F L+K+ F +M QDA E
Sbjct: 82 QKKKTGVIAPKRFVQRLKKQNELFRS-----YMHQDAHE 115