Miyakogusa Predicted Gene

Lj3g3v2693310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2693310.1 Non Characterized Hit- tr|E0VPJ7|E0VPJ7_PEDHC
Putative uncharacterized protein OS=Pediculus humanus ,26.19,3e-18,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RRM,RNA recognitio,CUFF.44440.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g016140.1 | small nuclear ribonucleoprotein | HC | chr8:53...   440   e-124
Medtr5g016680.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   179   3e-45
Medtr5g016680.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   178   4e-45
Medtr4g005900.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   124   7e-29
Medtr4g005900.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   123   2e-28
Medtr5g016680.3 | RNA recognition motif, a.k.a. RRM, RBD protein...   114   1e-25
Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    54   1e-07

>Medtr8g016140.1 | small nuclear ribonucleoprotein | HC |
           chr8:5394401-5388873 | 20130731
          Length = 268

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/267 (82%), Positives = 231/267 (86%)

Query: 1   MDQQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQ 60
           M  Q FD Y+ YQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQ
Sbjct: 1   MAMQQFDQYYHYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQ 60

Query: 61  VVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRS 120
           VVAFATFFNHQ+AM ALH+LNGVKFDPQ+GSVLHIELARSNSRRKRKPGGGAYVVIDKRS
Sbjct: 61  VVAFATFFNHQAAMQALHSLNGVKFDPQSGSVLHIELARSNSRRKRKPGGGAYVVIDKRS 120

Query: 121 KGETNVQXXXXXXXXXXXXXXXXXXXNHGDLATTQSGETAVGSDSAVPLGSEQHEKGGGD 180
           KGE NVQ                   NHGD+AT QSG+  VGSD+ VP+   QH KGGGD
Sbjct: 121 KGEANVQGSSSDDGESDPDEPSENGSNHGDIATAQSGDAVVGSDNHVPVARAQHGKGGGD 180

Query: 181 GGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLE 240
           GGPCSTLFIANLGPNCTEDELKQALSVY GFN+VKMRSRGGMPVAFADFEEIDQA KV+E
Sbjct: 181 GGPCSTLFIANLGPNCTEDELKQALSVYAGFNLVKMRSRGGMPVAFADFEEIDQAVKVME 240

Query: 241 ELQGSSLPSSDRGGMHIEYARSKMRKR 267
           ELQGSSLPSSDRGGMHIEYARS+MRK+
Sbjct: 241 ELQGSSLPSSDRGGMHIEYARSRMRKK 267


>Medtr5g016680.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:5999567-6005511 | 20130731
          Length = 340

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 149/273 (54%), Gaps = 8/273 (2%)

Query: 3   QQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVV 62
           QQ +D Y        +++ TLF++GLP+DVK REI+NLFR  PG++S  L+    ++Q  
Sbjct: 64  QQVYDSYVPSPLASTNDVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPNNSSQAF 123

Query: 63  AFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKG 122
           AFA F N QSA+ ALHALNG+ FD + GS L+I+LA+SNSR KR          DK+++G
Sbjct: 124 AFAVFSNQQSAIMALHALNGMIFDLEKGSTLYIDLAKSNSRAKRARIDDDRASSDKKARG 183

Query: 123 ETNVQXXXXXXXXXXXXX---XXXXXXNHGDLATTQSGETAVGSDSA----VPLGSEQHE 175
             +                        N       QS   A G+       + L    + 
Sbjct: 184 SASSWPTPDSGVSSIHMPGMGNPAFNTNMIGYPPAQSHGIADGNAMHDGLFLNLKKCSNP 243

Query: 176 KGGGDGGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQA 235
               +  PC+TLF+ANLGP+C E EL Q  S + GF  +KM+S  G PV+F DF++I  A
Sbjct: 244 YIPTNTTPCATLFVANLGPSCNEQELIQVFSRFPGFLKLKMQSTYGAPVSFVDFKDIPSA 303

Query: 236 TKVLEELQGSSLPSSDRG-GMHIEYARSKMRKR 267
           T  L  LQG+ L SS  G GM +EYA+S+M  R
Sbjct: 304 TVALNSLQGTILYSSPAGEGMRLEYAKSRMGMR 336


>Medtr5g016680.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:5999699-6005270 | 20130731
          Length = 341

 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 149/274 (54%), Gaps = 9/274 (3%)

Query: 3   QQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVV 62
           QQ +D Y        +++ TLF++GLP+DVK REI+NLFR  PG++S  L+    ++Q  
Sbjct: 64  QQVYDSYVPSPLASTNDVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPNNSSQAF 123

Query: 63  AFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKG 122
           AFA F N QSA+ ALHALNG+ FD + GS L+I+LA+SNSR KR          DK+++G
Sbjct: 124 AFAVFSNQQSAIMALHALNGMIFDLEKGSTLYIDLAKSNSRAKRARIDDDRASSDKKARG 183

Query: 123 ETNVQXXXXXXXXXXXXX----XXXXXXNHGDLATTQSGETAVGSDSA----VPLGSEQH 174
             +                         N       QS   A G+       + L    +
Sbjct: 184 SASSWPTPDSAGVSSIHMPGMGNPAFNTNMIGYPPAQSHGIADGNAMHDGLFLNLKKCSN 243

Query: 175 EKGGGDGGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQ 234
                +  PC+TLF+ANLGP+C E EL Q  S + GF  +KM+S  G PV+F DF++I  
Sbjct: 244 PYIPTNTTPCATLFVANLGPSCNEQELIQVFSRFPGFLKLKMQSTYGAPVSFVDFKDIPS 303

Query: 235 ATKVLEELQGSSLPSSDRG-GMHIEYARSKMRKR 267
           AT  L  LQG+ L SS  G GM +EYA+S+M  R
Sbjct: 304 ATVALNSLQGTILYSSPAGEGMRLEYAKSRMGMR 337


>Medtr4g005900.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:414085-418316 | 20130731
          Length = 319

 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 28/259 (10%)

Query: 20  INTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHA 79
           + T+F++GLP+DVK RE+ NL R  PGF++ QL +  +A + + FA F +   A+AA   
Sbjct: 35  VRTIFITGLPEDVKERELQNLCRWLPGFEASQLNF--KAEKPMGFALFNSPHQAIAAKDI 92

Query: 80  LNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDK----RSKGETNVQXXXXXXXX 135
           L  + FDP+  SVLH E+A+ N   KR  G  A V  D+    R+ G+ N          
Sbjct: 93  LQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADA-VAFDQSKRLRTAGDYNHTGYVTPSPF 151

Query: 136 XXXXXXXXXXXNHGDLA---------------TTQSGETAVGSDSAVPLGSEQHEKGGGD 180
                       +                          ++   S VP+ + +      D
Sbjct: 152 HPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTK------D 205

Query: 181 GGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLE 240
             PC+TLFI NLG N  E+E++   SV  GF  +K+  +    V F +FE+++ AT V  
Sbjct: 206 NPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHH 265

Query: 241 ELQGSSLPSSDRGGMHIEY 259
            LQG+ +PSS   GM I+Y
Sbjct: 266 NLQGAVIPSSGSIGMRIQY 284


>Medtr4g005900.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:414085-417175 | 20130731
          Length = 317

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 123/259 (47%), Gaps = 30/259 (11%)

Query: 20  INTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHA 79
           + T+F++GLP+DVK RE+ NL R  PGF++ QL +  +A + + FA F +   A+AA   
Sbjct: 35  VRTIFITGLPEDVKERELQNLCRWLPGFEASQLNF--KAEKPMGFALFNSPHQAIAAKDI 92

Query: 80  LNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDK----RSKGETNVQXXXXXXXX 135
           L  + FDP+  SVLH E+A+ N   KR   G   V  D+    R+ G+ N          
Sbjct: 93  LQDMLFDPEAKSVLHTEMAKKNLFVKR---GADAVAFDQSKRLRTAGDYNHTGYVTPSPF 149

Query: 136 XXXXXXXXXXXNHGDLA---------------TTQSGETAVGSDSAVPLGSEQHEKGGGD 180
                       +                          ++   S VP+ + +      D
Sbjct: 150 HPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTK------D 203

Query: 181 GGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLE 240
             PC+TLFI NLG N  E+E++   SV  GF  +K+  +    V F +FE+++ AT V  
Sbjct: 204 NPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHH 263

Query: 241 ELQGSSLPSSDRGGMHIEY 259
            LQG+ +PSS   GM I+Y
Sbjct: 264 NLQGAVIPSSGSIGMRIQY 282


>Medtr5g016680.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:5999669-6004108 | 20130731
          Length = 252

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 79/120 (65%)

Query: 3   QQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVV 62
           QQ +D Y        +++ TLF++GLP+DVK REI+NLFR  PG++S  L+    ++Q  
Sbjct: 64  QQVYDSYVPSPLASTNDVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPNNSSQAF 123

Query: 63  AFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKG 122
           AFA F N QSA+ ALHALNG+ FD + GS L+I+LA+SNSR KR          DK+++G
Sbjct: 124 AFAVFSNQQSAIMALHALNGMIFDLEKGSTLYIDLAKSNSRAKRARIDDDRASSDKKARG 183


>Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:44752922-44747555 | 20130731
          Length = 252

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 17  RSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQL-----KYTGRANQVVAFATFFNHQ 71
           R   +TL+V GLP D   RE+ ++FR   G+   +L     K+ G    ++ F  F N  
Sbjct: 148 RDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPA 207

Query: 72  SAMAALHALNGVKFD---PQTGSVLHIELARSNSRRKRKPG 109
            A  AL AL G K D   P++ S L ++ +RS  RR   PG
Sbjct: 208 CAATALSALQGYKVDEINPES-SYLRLQFSRSPGRRSGGPG 247