Miyakogusa Predicted Gene

Lj3g3v2692910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2692910.1 Non Characterized Hit- tr|D7KDV4|D7KDV4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.41,4e-17,seg,NULL; coiled-coil,NULL,CUFF.44390.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g017180.1 | mediator of RNA polymerase II transcription su...   171   4e-43

>Medtr8g017180.1 | mediator of RNA polymerase II transcription
           subunit-like protein, putative | HC |
           chr8:5777388-5772992 | 20130731
          Length = 196

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 91/96 (94%)

Query: 96  SLASHYQLLHLVENLAEVVDHGTPDQQSEALITELTNRFEKCQQLLNSISGSISTKAMTV 155
           SLASH+ LL+LVENLAEVV+HG PDQQS+ALITEL+N FEKCQQLLNSIS SISTKAMTV
Sbjct: 101 SLASHFHLLNLVENLAEVVEHGNPDQQSDALITELSNHFEKCQQLLNSISASISTKAMTV 160

Query: 156 EGQKKKLEESEQLLNQRRDLIADYKKSVEELVRSEP 191
           EGQKKKLEESEQLLNQRRDLIA+Y KSVEELVRSEP
Sbjct: 161 EGQKKKLEESEQLLNQRRDLIANYTKSVEELVRSEP 196