Miyakogusa Predicted Gene

Lj3g3v2666480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2666480.1 tr|Q9MAZ9|Q9MAZ9_SOYBN Nonclathrin coat protein
zeta1-COP OS=Glycine max GN=copz1 PE=2 SV=1,95,0,no description,NULL;
Clat_adaptor_s,AP complex, mu/sigma subunit; seg,NULL; SUBFAMILY NOT
NAMED,NULL,CUFF.44554.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g017630.1 | nonclathrin coat protein zeta1-COP | HC | chr8...   310   4e-85
Medtr0350s0010.1 | clathrin adaptor complex small chain | HC | s...   280   7e-76
Medtr2g028750.1 | nonclathrin coat protein zeta1-COP | HC | chr2...   242   1e-64
Medtr7g009640.1 | clathrin adaptor complex small chain | HC | ch...   204   3e-53
Medtr8g018030.1 | nonclathrin coat protein zeta1-COP, putative |...   110   8e-25

>Medtr8g017630.1 | nonclathrin coat protein zeta1-COP | HC |
           chr8:6034186-6037629 | 20130731
          Length = 180

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 151/179 (84%), Positives = 161/179 (89%)

Query: 1   MASNGQCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEV 60
           MASNG CPSIKNILLLDSEGKRVAVKYYSDDWPTN+SKLAFEKFVF+KT+KTNARTEAE+
Sbjct: 1   MASNGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEI 60

Query: 61  TLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXX 120
           TLLENNI++YKFVQDLHFFVTGGDDENELIL+SVLQGFFDAVTLLLRSNVDK EA     
Sbjct: 61  TLLENNIVVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRSNVDKSEALENLD 120

Query: 121 XXXXXXXXXVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLL 179
                    VDGGIILETNGPLIAEKVTSH++DADAPLSEQTLTQAWATAR+  TRTLL
Sbjct: 121 LILLCLDEIVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAWATARDTFTRTLL 179


>Medtr0350s0010.1 | clathrin adaptor complex small chain | HC |
           scaffold0350:4329-2007 | 20130731
          Length = 220

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 10  IKNILLL-DSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNII 68
           IKN   + DSEGKRVAVKYYSDDWPTN+SKLAFEKFVF++T+KTNARTEAE+TLLENNI+
Sbjct: 49  IKNCSFMNDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTETVKTNARTEAEITLLENNIV 108

Query: 69  IYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXXXXXXXXX 128
           +YKFVQDLHFFVTGGDDENELIL+SVLQGFFDAVTLLLRSNVDK EA             
Sbjct: 109 VYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRSNVDKSEALENLDLILLCLDE 168

Query: 129 XVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLL 179
            VDGGIILETNGPLIAEKVTSH++DADAPLSEQTLTQAWATAR+  TRTLL
Sbjct: 169 IVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAWATARDTFTRTLL 219


>Medtr2g028750.1 | nonclathrin coat protein zeta1-COP | HC |
           chr2:10665954-10669267 | 20130731
          Length = 205

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 139/173 (80%)

Query: 8   PSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNI 67
           PS+KNILLLDS+G+RVA KY+SDDWPTN++K AFEK VF+KT KTNARTEAE+T+ ENNI
Sbjct: 33  PSVKNILLLDSDGRRVAAKYFSDDWPTNSAKEAFEKLVFNKTQKTNARTEAEITMFENNI 92

Query: 68  IIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXXXXXXXX 127
           I+YKFVQDLHFFVTG DDENELIL+SVLQ FFD+V LLLR NVDK+EA            
Sbjct: 93  IVYKFVQDLHFFVTGSDDENELILSSVLQAFFDSVGLLLRGNVDKKEALENLDLILLCID 152

Query: 128 XXVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK 180
             +D GIILET    IA KV S+S ++ APLSEQTL+QA A+AREHL R+LLK
Sbjct: 153 EIIDAGIILETTPNTIAGKVGSNSTESGAPLSEQTLSQALASAREHLARSLLK 205


>Medtr7g009640.1 | clathrin adaptor complex small chain | HC |
           chr7:2171503-2172490 | 20130731
          Length = 150

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 113/134 (84%)

Query: 10  IKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNIII 69
           IKNILLLDSEGKRVAVKY+SDDWPTN+SKLAFEKFVF+KT+KTNARTEAE+TLLENNIII
Sbjct: 2   IKNILLLDSEGKRVAVKYFSDDWPTNSSKLAFEKFVFTKTIKTNARTEAEITLLENNIII 61

Query: 70  YKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXXXXXXXXXX 129
           YKF QDLHFFVTG DDENE++LASVLQGFFDA+TLLLR+NVDKREA              
Sbjct: 62  YKFAQDLHFFVTGSDDENEIVLASVLQGFFDAITLLLRNNVDKREALENLDLILLCLDEI 121

Query: 130 VDGGIILETNGPLI 143
           VDGG + + +  L+
Sbjct: 122 VDGGYVYDFSHILL 135


>Medtr8g018030.1 | nonclathrin coat protein zeta1-COP, putative |
          HC | chr8:6063491-6063862 | 20130731
          Length = 92

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 58/65 (89%)

Query: 1  MASNGQCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEV 60
          + S G CPSIKNILLLDSEGKRVAVKYYSDDWPTN+SKLAFEKFVF++T+KTNARTE + 
Sbjct: 2  IISFGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTETVKTNARTEGKQ 61

Query: 61 TLLEN 65
           +L N
Sbjct: 62 QILRN 66